lehner-lab / DiMSumLinks
An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
☆33Updated 2 months ago
Alternatives and similar repositories for DiMSum
Users that are interested in DiMSum are comparing it to the libraries listed below
Sorting:
- ☆74Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆88Updated last year
- Evolutionary velocity with protein language models☆93Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated 2 weeks ago
- Tool for deep mutational scanning experiments.☆52Updated 4 months ago
- Multi-class signal peptide prediction and structure decoding model.☆88Updated 5 months ago
- Code for LazyAF pipeline☆20Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Protein 3D structure prediction pipeline☆82Updated last week
- Diverse Genomic Embedding Benchmark☆46Updated 3 months ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆46Updated 5 years ago
- Evolutionary conservation estimation of residues or nucleotides☆45Updated 3 years ago
- A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions☆13Updated last week
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆49Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- HLA-I ligand predictor☆41Updated 6 months ago
- MMseqs2 app to run on your workstation or servers☆87Updated last week
- Draw RNA secondary structures in python.☆48Updated 3 weeks ago
- a pipeline to build similarity maps of protein space☆35Updated 7 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆39Updated 10 months ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated 11 months ago