An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
☆45Sep 16, 2025Updated last year
Alternatives and similar repositories for DiMSum
Users that are interested in DiMSum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical inference of growth-based deep mutational scanning (DMS) screens☆11Feb 27, 2026Updated 8 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆57Aug 13, 2026Updated 2 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Jul 20, 2023Updated 3 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago
- Tool for deep mutational scanning experiments.☆60May 6, 2026Updated 5 months ago
- Python Client Library for the G2P Portal API☆15Updated this week
- ☆16Apr 3, 2025Updated last year
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 10 years ago
- This bartender version could handle arbitrary length of barcode☆34Sep 24, 2026Updated last month
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Supporting information for predicting and engineering post-translational modifcations using Rosetta☆10Feb 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Apr 26, 2023Updated 3 years ago
- ☆12Aug 30, 2024Updated 2 years ago
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Oct 6, 2022Updated 4 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆40Feb 17, 2022Updated 4 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 5 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Interactive visualization of mutational antigenic profiling data☆11Aug 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Apr 10, 2025Updated last year
- predict stability change upon mutation☆33Jun 28, 2024Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆45Sep 7, 2026Updated last month
- MaveDB API☆19Updated this week
- Ultrafast and powerful eGene identification method☆10Jul 17, 2025Updated last year
- Efficient implementation of Hoeffding Distance in Python for large datasets☆22Jan 10, 2020Updated 6 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- Style code output, errors, warnings, and messages in Quarto!☆12Aug 25, 2025Updated last year
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆34Dec 20, 2024Updated last year
- PLMFit platform for TL on PLMs☆22Aug 13, 2025Updated last year
- A next generation of CRISPR screening analysis tool☆15Updated this week
- An evolutionary probability-based hybrid model to support protein engineering campaigns☆10Sep 3, 2024Updated 2 years ago