de-Boer-Lab / GILLinks
☆14Updated 2 years ago
Alternatives and similar repositories for GIL
Users that are interested in GIL are comparing it to the libraries listed below
Sorting:
- Filter SAM file for soft and hard clipped alignments☆52Updated last year
- Creating alignment plots from bam files☆65Updated last week
- A local-haplotagging-based small and structural variant caller☆87Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- The Flexible Demultiplexer☆35Updated last month
- ☆25Updated 2 weeks ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- python plotly Circos from VCF☆40Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- seqfu - Sequece Fastx Utilities☆121Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- k-mer learning materials☆80Updated 8 months ago
- Merging paired-end reads and removing adapters☆46Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- ☆50Updated last month
- ☆46Updated 2 weeks ago
- Experimental features for Nextflow☆45Updated 2 months ago
- A template repository for snakemake workflows.☆40Updated 11 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Simple pileup-based variant caller☆93Updated 6 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- A program for detection of tRNA genes☆72Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago