gencorefacility / r-notebooks
Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
☆20Updated 5 years ago
Alternatives and similar repositories for r-notebooks:
Users that are interested in r-notebooks are comparing it to the libraries listed below
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆48Updated 4 years ago
- A list of alternative splicing analysis resources☆43Updated 3 weeks ago
- ☆23Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- A continually expanding collection of RNA-seq tools☆48Updated 6 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆51Updated 2 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- Workshop • Analysis of RNA-seq data☆35Updated last year
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 3 weeks ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated last month
- Define regions in the genome☆29Updated 3 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆14Updated 2 years ago