Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
☆21Jun 20, 2019Updated 7 years ago
Alternatives and similar repositories for r-notebooks
Users that are interested in r-notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated last month
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)☆20Apr 27, 2015Updated 11 years ago
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics☆22Dec 8, 2022Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆25Sep 5, 2024Updated 2 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- DRUGZ software☆24Aug 9, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a complete reference book for clusterProfiler and its sub-packages☆16Aug 12, 2021Updated 5 years ago
- ☆35Jul 8, 2025Updated last year
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- Python Programming for Biologists☆13Dec 3, 2025Updated 9 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- Label elements within user drawn gates☆26Oct 10, 2025Updated 11 months ago
- ☆25Feb 6, 2025Updated last year
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Info about NIH-IRP Single Cell Users Group events☆12Nov 21, 2023Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- Simple template for running snakemake with R☆12Jan 31, 2023Updated 3 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 4 months ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 8 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Jun 4, 2026Updated 3 months ago
- This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BI…☆16May 24, 2022Updated 4 years ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 5 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago