Alternatives and similar repositories for CEMiTool

Users that are interested in CEMiTool are comparing it to the libraries listed below

• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆192Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated last week
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆133Updated last month
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• omarwagih / ggseqlogo
  Publication-quality sequence logos in R
  ☆216Updated 9 months ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆158Updated 10 months ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆78Updated last year
• hbctraining / main
  ☆55Updated this week
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆30Updated 2 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated 10 months ago
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆135Updated last year
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆130Updated last year
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆107Updated 3 months ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 5 months ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆174Updated 3 weeks ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 5 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆164Updated 8 months ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆169Updated last year
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 7 months ago
• RamRS / biostar-mod-templates
  Moderator Templates for https://www.biostars.org/
  ☆11Updated 4 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆62Updated last year
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆153Updated 9 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆237Updated 3 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆112Updated this week
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆62Updated 2 years ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆149Updated 2 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆96Updated 3 years ago