sdwfrost / mevr-course-2016Links
Molecular Epidemiology of Viruses in R
☆19Updated 9 years ago
Alternatives and similar repositories for mevr-course-2016
Users that are interested in mevr-course-2016 are comparing it to the libraries listed below
Sorting:
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Updated 7 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- Materials for Module 2 of the SISBID Workshop, Visualization of Biomedical Big Data☆26Updated 8 years ago
- An Amazing Shiny App☆17Updated 4 years ago
- ☆11Updated 4 months ago
- ☆54Updated last month
- R package to estimate kinship and FST from SNP data☆21Updated 11 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated 11 months ago
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated last month
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Updated 4 years ago
- Teaching material for Summer Institute in Statistics for Big Data Module 1.☆65Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- ☆52Updated last month
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 4 months ago
- ☆36Updated 10 months ago
- ☆19Updated last week
- Phylogenetic plots for R and ggplot☆27Updated 12 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- a take on ordination plots using ggplot2☆65Updated last year
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- A Toolbox for Manipulating Biological Sequences in R☆23Updated 3 years ago
- ☆18Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- Mixed models @lme4 + custom covariances + parameter constraints☆53Updated 4 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- phylogenetic networks using ggplot2 and ggtree☆13Updated 8 months ago