artic-network / rampartLinks
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
☆82Updated 10 months ago
Alternatives and similar repositories for rampart
Users that are interested in rampart are comparing it to the libraries listed below
Sorting:
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆119Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Chromosome-level scaffolding using multiple references☆164Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 9 months ago
- Rapid determination of appropriate reference genomes.☆99Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 2 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated 3 weeks ago
- Split Kmer Analysis☆67Updated 3 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- ☆84Updated 2 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆76Updated last year
- ☆81Updated 5 years ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year