andersonbrito / subsampler
☆13Updated 2 years ago
Alternatives and similar repositories for subsampler:
Users that are interested in subsampler are comparing it to the libraries listed below
- Reconstruction of transmission trees using genomic data☆62Updated last year
- ☆16Updated 3 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆15Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆33Updated 3 weeks ago
- Influenza data pipeline to automate genotyping assignment☆32Updated 2 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆31Updated this week
- ☆17Updated 2 weeks ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Estimating time trees from very large phylogenies☆26Updated 9 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆37Updated this week
- ☆20Updated 3 weeks ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- ☆11Updated 2 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 6 months ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆16Updated this week
- Phylodynamic inference☆18Updated 4 years ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆35Updated 2 weeks ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Interpretative standards for AMR genotypes☆18Updated 9 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆13Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 2 weeks ago
- Main development repository for SpreadGL☆18Updated 6 months ago
- UPHL's Reference Free Pipeline☆26Updated 2 weeks ago
- Infer transmission clusters from SNP and timing data☆14Updated 4 years ago
- ☆19Updated this week
- Utility to alias and dealias pango lineages☆22Updated last year