samtools / tabix
Note: tabix and bgzip binaries are now part of the HTSlib project.
☆91Updated 3 years ago
Alternatives and similar repositories for tabix:
Users that are interested in tabix are comparing it to the libraries listed below
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- Plotting tools for nanopore methylation data☆93Updated 11 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last week
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- conda recipes for genomic data☆85Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Structural Variant Index☆72Updated 4 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆121Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆98Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆82Updated last year
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆111Updated 2 years ago
- ☆89Updated 3 years ago