Note: tabix and bgzip binaries are now part of the HTSlib project.
☆90Aug 3, 2021Updated 4 years ago
Alternatives and similar repositories for tabix
Users that are interested in tabix are comparing it to the libraries listed below
Sorting:
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- C library for high-throughput sequencing data formats☆910Feb 6, 2026Updated 3 weeks ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆551May 15, 2025Updated 9 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆846Feb 16, 2026Updated 2 weeks ago
- HGVS variant nomenclature checker☆98May 1, 2023Updated 2 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Aug 22, 2018Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆19Oct 28, 2024Updated last year
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Dec 24, 2025Updated 2 months ago
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Sep 3, 2019Updated 6 years ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,849Updated this week
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.☆14Mar 20, 2024Updated last year
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- ☆15Jan 28, 2023Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- A powerful toolset for genome arithmetic.☆142May 28, 2021Updated 4 years ago
- C++ API & command-line toolkit for working with BAM data☆429May 18, 2025Updated 9 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Nov 26, 2018Updated 7 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆668Oct 31, 2025Updated 4 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated last week
- This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.☆15Jun 14, 2025Updated 8 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,022Mar 11, 2025Updated 11 months ago
- ☆64Dec 9, 2020Updated 5 years ago
- Visualization and analysis software for Hi-C data -☆283Aug 6, 2024Updated last year
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆475Aug 31, 2025Updated 6 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆176Apr 12, 2024Updated last year