Note: tabix and bgzip binaries are now part of the HTSlib project.
☆92Aug 3, 2021Updated 5 years ago
Alternatives and similar repositories for tabix
Users that are interested in tabix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C library for high-throughput sequencing data formats☆940Updated this week
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆562May 15, 2025Updated last year
- ☆13Jun 21, 2017Updated 9 years ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆883Jul 30, 2026Updated last week
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,939Updated this week
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- HGVS variant nomenclature checker☆99May 1, 2023Updated 3 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆302Aug 22, 2018Updated 7 years ago
- Modified or extracted from other programs☆15Dec 14, 2011Updated 14 years ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 3 months ago
- This is *NOT* the official repository of samtools.☆49Jun 9, 2017Updated 9 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- C++ API & command-line toolkit for working with BAM data☆431May 18, 2025Updated last year
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 5 months ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated last month
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,070Jul 31, 2026Updated last week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆683Mar 20, 2026Updated 4 months ago
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated 2 years ago
- Visualization and analysis software for Hi-C data -☆300Aug 6, 2024Updated 2 years ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- bedtools - the swiss army knife for genome arithmetic☆1,045Jun 10, 2026Updated 2 months ago
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆710Jul 20, 2026Updated 3 weeks ago
- DRAGEN open-source mapper☆189Sep 8, 2023Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆488Aug 31, 2025Updated 11 months ago