Alternatives and similar repositories for tabix

Users that are interested in tabix are comparing it to the libraries listed below

• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆72Updated 7 years ago
• statgen / bamUtil
  ☆91Updated 3 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆82Updated last month
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆98Updated last year
• relipmoc / skewer
  ☆95Updated 2 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆53Updated 8 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated this week
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 3 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• vplagnol / ExomeDepth
  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
  ☆71Updated last month
• brwnj / bcl2fastq
  NextSeq specific bcl2fastq2 wrapper.
  ☆55Updated 4 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆72Updated 11 months ago
• lh3 / CHM-eval
  ☆54Updated 5 years ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆78Updated last year
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆106Updated 4 years ago
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆57Updated 4 years ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆74Updated 5 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆80Updated last year
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆95Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 3 months ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 2 years ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago