samtools / bcftoolsLinks
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
☆809Updated 2 weeks ago
Alternatives and similar repositories for bcftools
Users that are interested in bcftools are comparing it to the libraries listed below
Sorting:
- A fast and sensitive gapped read aligner☆743Updated 2 weeks ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆534Updated 4 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆842Updated 3 months ago
- The next version of bwa-mem☆781Updated 2 months ago
- A quality control analysis tool for high throughput sequencing data☆530Updated last month
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆690Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆506Updated last week
- bedtools - the swiss army knife for genome arithmetic☆998Updated 6 months ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,781Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆700Updated last week
- C library for high-throughput sequencing data formats☆877Updated last week
- SRA Tools☆1,255Updated this week
- BWK awk modified for biological data☆627Updated 3 years ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆851Updated 3 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆654Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆689Updated 2 weeks ago
- Haplotype VCF comparison tools☆442Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,491Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,354Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆869Updated 7 months ago
- Transcript assembly and quantification for RNA-Seq☆459Updated 3 weeks ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆829Updated last year
- The second version of the Kraken taxonomic sequence classification system☆823Updated 2 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆510Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆754Updated last month
- Structural variation caller using third generation sequencing☆615Updated 3 weeks ago
- SPAdes Genome Assembler☆867Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆485Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆868Updated 4 months ago
- Java utilities for Bioinformatics☆512Updated 2 weeks ago