samtools / bcftoolsLinks
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
☆781Updated 2 weeks ago
Alternatives and similar repositories for bcftools
Users that are interested in bcftools are comparing it to the libraries listed below
Sorting:
- The next version of bwa-mem☆766Updated 2 weeks ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆534Updated 2 months ago
- A fast and sensitive gapped read aligner☆724Updated 7 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆834Updated last month
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆682Updated this week
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,745Updated this week
- A quality control analysis tool for high throughput sequencing data☆517Updated last year
- C library for high-throughput sequencing data formats☆860Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆686Updated this week
- BWK awk modified for biological data☆624Updated 2 years ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- Haplotype VCF comparison tools☆437Updated last year
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆649Updated last week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆836Updated last month
- The second version of the Kraken taxonomic sequence classification system☆809Updated last week
- A single molecule sequence assembler for genomes large and small.☆683Updated this week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆425Updated 2 months ago
- Structural variation caller using third generation sequencing☆603Updated last week
- Trinity RNA-Seq de novo transcriptome assembly☆865Updated 5 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆503Updated 8 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,476Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆475Updated 2 weeks ago
- Tools for working with SAM/BAM data☆593Updated 6 months ago
- SRA Tools☆1,235Updated this week
- Tools to process and analyze deep sequencing data.☆723Updated last week
- Java utilities for Bioinformatics☆504Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆589Updated last week
- Transcript assembly and quantification for RNA-Seq☆450Updated 3 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆513Updated 4 months ago