samtools / bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
☆680Updated this week
Related projects ⓘ
Alternatives and complementary repositories for bcftools
- bedtools - the swiss army knife for genome arithmetic☆939Updated 4 months ago
- The next version of bwa-mem☆722Updated 3 months ago
- A fast and sensitive gapped read aligner☆683Updated this week
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆504Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆456Updated this week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆789Updated 5 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆655Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆450Updated 10 months ago
- Haplotype VCF comparison tools☆420Updated 11 months ago
- C library for high-throughput sequencing data formats☆813Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆647Updated this week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆621Updated 3 weeks ago
- Transcript assembly and quantification for RNA-Seq☆384Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆444Updated 3 weeks ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆421Updated 8 months ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,631Updated this week
- Java utilities for Bioinformatics☆485Updated this week
- A single molecule sequence assembler for genomes large and small.☆660Updated this week
- Tools for working with SAM/BAM data☆565Updated 4 months ago
- Structural variation caller using third generation sequencing☆561Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- BWK awk modified for biological data☆593Updated 2 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆526Updated this week
- Data and analysis for NA12878 genome on nanopore☆375Updated 2 years ago
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,395Updated 3 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆393Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆713Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆366Updated 11 months ago