samtools / bcftoolsLinks
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
☆812Updated 2 weeks ago
Alternatives and similar repositories for bcftools
Users that are interested in bcftools are comparing it to the libraries listed below
Sorting:
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆537Updated 4 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆690Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆845Updated 4 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆506Updated this week
- The next version of bwa-mem☆785Updated 3 months ago
- A quality control analysis tool for high throughput sequencing data☆541Updated last week
- C library for high-throughput sequencing data formats☆882Updated 2 weeks ago
- A fast and sensitive gapped read aligner☆741Updated last month
- bedtools - the swiss army knife for genome arithmetic☆999Updated 6 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆699Updated this week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆855Updated 3 weeks ago
- Java utilities for Bioinformatics☆512Updated last month
- BWK awk modified for biological data☆630Updated 3 years ago
- Haplotype VCF comparison tools☆445Updated last year
- The second version of the Kraken taxonomic sequence classification system☆827Updated last month
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆657Updated 3 months ago
- A single molecule sequence assembler for genomes large and small.☆691Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- Structural variation caller using third generation sequencing☆619Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆432Updated 2 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆834Updated last year
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,787Updated 2 weeks ago
- Transcript assembly and quantification for RNA-Seq☆464Updated this week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆531Updated 3 weeks ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- Tools to process and analyze deep sequencing data.☆737Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,365Updated 3 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆756Updated 2 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,498Updated 4 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆487Updated this week