samtools / bcftoolsLinks
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
☆793Updated this week
Alternatives and similar repositories for bcftools
Users that are interested in bcftools are comparing it to the libraries listed below
Sorting:
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆838Updated 2 months ago
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆686Updated 3 weeks ago
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆536Updated 2 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated last week
- A fast and sensitive gapped read aligner☆728Updated 7 months ago
- The next version of bwa-mem☆771Updated last month
- bedtools - the swiss army knife for genome arithmetic☆988Updated 4 months ago
- C library for high-throughput sequencing data formats☆868Updated 3 weeks ago
- A quality control analysis tool for high throughput sequencing data☆520Updated last year
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,759Updated this week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆694Updated last week
- Java utilities for Bioinformatics☆505Updated last week
- Haplotype VCF comparison tools☆438Updated last year
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆651Updated last month
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆843Updated last month
- A single molecule sequence assembler for genomes large and small.☆685Updated 3 weeks ago
- Graph-based alignment (Hierarchical Graph FM index)☆508Updated 8 months ago
- Transcript assembly and quantification for RNA-Seq☆458Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆811Updated 2 weeks ago
- BWK awk modified for biological data☆625Updated 2 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,483Updated 2 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆866Updated 6 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,337Updated last week
- SPAdes Genome Assembler☆853Updated last week
- Structural variation caller using third generation sequencing☆610Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆519Updated 4 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆751Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆857Updated 3 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆447Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,636Updated 4 months ago