samocooper / nuclitrack
A python developed graphical user interface for tracking cell nuclei
☆9Updated 7 years ago
Alternatives and similar repositories for nuclitrack:
Users that are interested in nuclitrack are comparing it to the libraries listed below
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆14Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 2 weeks ago
- Python nd2 reader based on the ND2 SDK☆16Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Toolbox for the analysis of smFISH images.☆59Updated last year
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- ☆19Updated 3 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- ☆10Updated 4 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated 3 weeks ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- StarDist plugin for ImageJ☆27Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated last month
- Jupyter notebooks for CellProfiler and friends☆12Updated 6 years ago
- ☆15Updated 6 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated last month
- quantixed FIJI update site☆16Updated last month