samocooper / nuclitrackLinks
A python developed graphical user interface for tracking cell nuclei
☆9Updated 7 years ago
Alternatives and similar repositories for nuclitrack
Users that are interested in nuclitrack are comparing it to the libraries listed below
Sorting:
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Automated cell tracking package for MATLAB☆11Updated 6 years ago
- Community-contributed and experimental CellProfiler modules.☆65Updated 2 weeks ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.☆17Updated last year
- ☆25Updated 4 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆29Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Find profile pairs and compute metrics between them.☆12Updated 2 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- ☆19Updated 4 years ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- ☆11Updated 4 years ago
- Curated metadata for all studies published in the Image Data Resource☆16Updated 2 weeks ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- quantixed FIJI update site☆16Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- MethodsJ2☆14Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- QuPath extension for Cellsparse☆18Updated last month