CBIIT / Misteli-Lab-CCR-NCI
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
☆17Updated last year
Alternatives and similar repositories for Misteli-Lab-CCR-NCI:
Users that are interested in Misteli-Lab-CCR-NCI are comparing it to the libraries listed below
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆19Updated 3 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Lectures for a napari training course☆50Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- segmentation of rod-shaped bacteria☆15Updated last year
- Generate markdown notebooks from ImageJ Macro☆24Updated 3 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago
- StarDist plugin for napari☆37Updated 5 months ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated 3 weeks ago
- ☆68Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- MethodsJ2☆14Updated 2 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆87Updated 3 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- A python developed graphical user interface for tracking cell nuclei☆9Updated 7 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year