CBIIT / Misteli-Lab-CCR-NCI

Related projects ⓘ

Alternatives and complementary repositories for Misteli-Lab-CCR-NCI

• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 3 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆39Updated 3 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆33Updated this week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆48Updated 3 weeks ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆16Updated 3 weeks ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 weeks ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆21Updated last year
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆94Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆35Updated last year
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆57Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆15Updated 4 months ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆26Updated 6 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated last month
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆47Updated last month
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• samocooper / nuclitrack
  A python developed graphical user interface for tracking cell nuclei
  ☆9Updated 6 years ago
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆21Updated last month
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆42Updated 3 weeks ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆15Updated 3 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 3 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆25Updated 3 weeks ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆19Updated 3 years ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 2 years ago
• BBQuercus / deepBlink
  Threshold independent detection and localization of diffraction-limited spots.
  ☆32Updated 2 years ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆19Updated this week
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆61Updated last year
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆12Updated last month
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 3 years ago