CBIIT / Misteli-Lab-CCR-NCILinks
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
☆18Updated 2 years ago
Alternatives and similar repositories for Misteli-Lab-CCR-NCI
Users that are interested in Misteli-Lab-CCR-NCI are comparing it to the libraries listed below
Sorting:
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆14Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated last year
- Lectures for a napari training course☆51Updated 2 years ago
- Deep Learning Library for Spot Detection☆21Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆31Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated last week
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Lab for quantitative bioimage analysis experiments in Python☆19Updated last week
- Mitochondria Analyzer☆24Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆64Updated 2 years ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Framework for image and flow cytometry analysis☆32Updated last month
- The official QuPath extension for InstanSeg☆29Updated 3 weeks ago
- quantixed FIJI update site☆17Updated last month
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆18Updated 11 months ago
- CellProfiler tutorial pipelines and images☆99Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago