theislab / deepflowLinks
This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
☆33Updated 7 years ago
Alternatives and similar repositories for deepflow
Users that are interested in deepflow are comparing it to the libraries listed below
Sorting:
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- Integrated Cell project implemented in pytorch☆44Updated last month
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- Deep learning for single-cell transcript counts☆88Updated 8 months ago
- Morphological profiling using deep learning☆124Updated last year
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- ☆13Updated 6 years ago
- Community-contributed and experimental CellProfiler modules.☆71Updated 3 weeks ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Updated last year
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- A web application for classifying objects☆29Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- DSDE Deep Learning Club☆40Updated 6 years ago
- ☆11Updated 8 years ago
- ☆16Updated 4 years ago
- ☆46Updated last month
- Codebase for training the SubCell models☆16Updated last week
- Model zoo for genomics☆172Updated last year
- ☆101Updated last year
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 5 months ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- The art of using t-SNE for single-cell transcriptomics☆129Updated last year
- ☆18Updated 8 years ago