theislab / deepflowLinks
This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
☆33Updated 7 years ago
Alternatives and similar repositories for deepflow
Users that are interested in deepflow are comparing it to the libraries listed below
Sorting:
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Integrated Cell project implemented in pytorch☆44Updated 2 months ago
- A web application for classifying objects☆29Updated 4 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated last week
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Morphological profiling using deep learning☆124Updated last year
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- ☆13Updated 6 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 5 years ago
- ☆46Updated 2 months ago
- Deep learning for single-cell transcript counts☆88Updated 9 months ago
- DSDE Deep Learning Club☆40Updated 6 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Updated 2 years ago
- ☆11Updated 8 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated last week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Repository for the code for DeepATAC project presented at WCB workshop in ICML2017☆22Updated 8 years ago
- ☆16Updated 4 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆63Updated 4 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- The art of using t-SNE for single-cell transcriptomics☆130Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago