Alternatives and similar repositories for deepflow

Users that are interested in deepflow are comparing it to the libraries listed below

• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• gigascience / paper-bray2017
  Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…
  ☆41Updated last year
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 8 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last year
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆23Updated 2 years ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆29Updated 5 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• martinjzhang / single_cell_eb
  Empirical Bayes methods for single cell data
  ☆16Updated 4 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• KlugerLab / deepcytof
  ☆18Updated 8 years ago
• weallen / STARmap
  Software for processing and analyzing STARmap experiments.
  ☆38Updated 5 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆17Updated 3 weeks ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 3 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆118Updated 8 months ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• wenjiegroup / BiRen
  ☆13Updated 5 years ago
• nolanlab / vortex
  VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
  ☆34Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated 10 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆82Updated 9 months ago