soft-matter / pims_nd2Links
Python nd2 reader based on the ND2 SDK
☆17Updated 4 years ago
Alternatives and similar repositories for pims_nd2
Users that are interested in pims_nd2 are comparing it to the libraries listed below
Sorting:
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Read and write life sciences file formats☆142Updated 8 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- ☆36Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated last week
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Single-cell fluorescence microscopy data analysis☆26Updated 4 years ago
- ☆51Updated 9 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- Command-line client for Fractal☆48Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Core functionality of NanoJ☆17Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆153Updated last week
- TrackMate is your buddy for your everyday tracking.☆226Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- ☆92Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago