Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
☆31Sep 11, 2021Updated 4 years ago
Alternatives and similar repositories for CPC2_standalone
Users that are interested in CPC2_standalone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆17Feb 29, 2024Updated 2 years ago
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated this week
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆248Jun 19, 2026Updated 2 weeks ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated 2 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Annotating principal splice isoforms☆18Nov 20, 2025Updated 7 months ago
- Coding-Non-Coding Index (CNCI)☆42Mar 6, 2018Updated 8 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- ☆45Dec 11, 2025Updated 6 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A robust Python tool for the annotation of 3’ UTRs☆25May 18, 2026Updated last month
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆18May 23, 2026Updated last month
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 2 months ago
- Daily usage script recording☆12Jun 9, 2026Updated 3 weeks ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Jun 27, 2026Updated last week
- Danny Ma's 8 Week SQL Challenge Best Solutions on the Internet☆16Sep 20, 2024Updated last year
- ☆15Sep 14, 2021Updated 4 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- A tool for evaluate long-read de novo assembly results☆51Aug 28, 2024Updated last year
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Jun 10, 2026Updated 3 weeks ago
- ☆15Apr 16, 2026Updated 2 months ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 4 months ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆23Jun 5, 2018Updated 8 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Mar 19, 2020Updated 6 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆128Jun 1, 2026Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆15Updated this week
- Transcript assembly and quantification for RNA-Seq☆520Jun 3, 2026Updated last month
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago