Official repo for the standalone package of Coding Potential Calculator (CPC) 2.
☆32Sep 11, 2021Updated 5 years ago
Alternatives and similar repositories for CPC2_standalone
Users that are interested in CPC2_standalone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Coding-Potential Assessment Tool using an alignment-free logistic regression model☆18Feb 29, 2024Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 months ago
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated 2 months ago
- Danny Ma's 8 Week SQL Challenge Best Solutions on the Internet☆17Sep 20, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated 3 weeks ago
- ☆11Jan 8, 2026Updated 9 months ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆260Oct 2, 2026Updated 2 weeks ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆28May 18, 2024Updated 2 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 5 months ago
- ☆45Dec 11, 2025Updated 10 months ago
- ☆12Jan 15, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Coding-Non-Coding Index (CNCI)☆43Mar 6, 2018Updated 8 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Annotating principal splice isoforms☆19Nov 20, 2025Updated 10 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 10 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- A robust Python tool for the annotation of 3’ UTRs☆25Aug 20, 2026Updated last month
- Importing and manipulating Hi-C data in R☆12Oct 5, 2026Updated last week
- Mosaic Genome Assembler☆29Sep 14, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆29Jul 16, 2022Updated 4 years ago
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆132Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- ☆15Sep 14, 2021Updated 5 years ago
- Methods for the analyses described in Moody et al. 2024 (https://www.nature.com/articles/s41559-024-02461-1)☆13Dec 10, 2025Updated 10 months ago
- ☆34Apr 7, 2025Updated last year
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Evaluating genome assemblies☆128Mar 3, 2026Updated 7 months ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 7 months ago
- ☆16Oct 8, 2026Updated last week
- Daily usage script recording☆12Sep 23, 2026Updated 3 weeks ago
- A tool for evaluate long-read de novo assembly results☆52Aug 28, 2024Updated 2 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆212Sep 28, 2026Updated 2 weeks ago