Single-cell Colorectal Cancer Atlas with 4.27M cells
☆23Aug 7, 2025Updated last year
Alternatives and similar repositories for crc-atlas
Users that are interested in crc-atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of R scripts covering the entire analysis workflow for single-cell RNA sequencing (scRNA-seq).☆36Aug 10, 2026Updated last month
- ☆37Jan 3, 2025Updated last year
- ☆38Jun 4, 2024Updated 2 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 31, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- ☆49Jan 28, 2026Updated 7 months ago
- Dynamic weighted sampling with replacement☆14Mar 19, 2016Updated 10 years ago
- Easy and Efficient Batch Processing of Regression Models in R☆15Aug 1, 2026Updated last month
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- ☆15Jul 25, 2025Updated last year
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆80Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- single cell analysis of treatment naive and treated human PDAC☆26May 27, 2022Updated 4 years ago
- ☆17Mar 10, 2026Updated 6 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆36Sep 7, 2026Updated last week
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated 2 years ago
- Python language bindings for bwa☆12Jul 19, 2026Updated 2 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Feb 17, 2021Updated 5 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆23Dec 1, 2024Updated last year
- Mastering Machine Learning with R, Third edition, by Packt☆33Jan 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆16Jun 24, 2025Updated last year
- Remove unwanted batch effects☆16Sep 9, 2026Updated last week
- R package for normalisation of spatial transcriptomics data☆20Sep 8, 2026Updated last week
- several R scripts about Machine Learning that I code☆11Jun 3, 2021Updated 5 years ago
- SOMA PyTorch loaders☆14Sep 24, 2025Updated 11 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- An AnnData-based framework for integrated proteomics analysis☆30Sep 7, 2026Updated last week
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 3 years ago
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆28Apr 27, 2026Updated 4 months ago
- Pareto Task Inference in Python☆23Updated this week
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆20Oct 26, 2024Updated last year
- ☆13Jul 8, 2026Updated 2 months ago
- ☆17Jun 17, 2021Updated 5 years ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆37Jul 22, 2026Updated last month
- ☆23May 21, 2026Updated 3 months ago