saezlab / decoupleRBench
Package to benchmark methods from decoupleR
☆9Updated 2 years ago
Alternatives and similar repositories for decoupleRBench:
Users that are interested in decoupleRBench are comparing it to the libraries listed below
- Querying cellular states and programs by learning representations of gene sets☆12Updated 10 months ago
- ☆43Updated 6 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated last month
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- Spatial Image Analysis of Tissues☆15Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 4 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆23Updated 9 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 3 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆14Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- RNA velocity validation☆22Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated this week
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- Multiview Intercellular SpaTial modeling framework☆54Updated last year
- An R package for visualising cell-cell interactions☆44Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- ☆28Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Code used for muti cellular factor analysis☆13Updated last year