Alternatives and similar repositories for PhosMap

Users that are interested in PhosMap are comparing it to the libraries listed below

• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated 3 months ago
• PYangLab / PhosR
  PhosR is a package for the comprehensive analysis of phosphoproteomic data.
  ☆16Updated 7 months ago
• tidymass / tidymass
  tidymass
  ☆55Updated last month
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆23Updated 2 months ago
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated 2 months ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆37Updated last week
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated 4 months ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 2 months ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆41Updated 2 weeks ago
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆29Updated 3 months ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆23Updated 6 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated 2 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆26Updated last year
• WangLab-MSSM / DreamAI
  Imputation of missing values of a matrix or data.frame using iterative prediction model
  ☆34Updated 3 months ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆24Updated last week
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated 2 years ago
• immunogenomics / amp_phase1_ra
  Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
  ☆20Updated 3 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆59Updated last year
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 10 months ago
• lanagarmire / Asgard
  ☆43Updated last year
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• ktrns / scrnaseq
  Workflow for single-cell RNA-seq analysis using Seurat
  ☆42Updated last year
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆39Updated 3 months ago