🕸 Network-based multi-omic integration of metabolomics data.
☆10Oct 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for metabridge_shiny
Users that are interested in metabridge_shiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R interface for popular survival network meta-analysis models (requires WinBUGS)☆13Oct 13, 2020Updated 6 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆31Mar 11, 2023Updated 3 years ago
- Illumina Human Methylation EPIC annotation to use with IlluminaHumanMethylationEPICB5manifest and minfi☆11Jul 28, 2020Updated 6 years ago
- Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)☆11May 27, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DeGAML-LLM: Decoupling Generalization and Adaptation in Meta-Learning for Large Language Models☆19Jan 8, 2026Updated 10 months ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Reproducible GSEA Benchmarking☆14Updated this week
- R Interface to the Metabolights REST API☆12Jun 10, 2026Updated 4 months ago
- A curated biochemical database that integrates and refines data from KEGG and ATLAS databases to support precise analyses of biochemical …☆15May 13, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Mar 10, 2024Updated 2 years ago
- Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.☆15Mar 3, 2025Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆71Sep 3, 2026Updated 2 months ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆33Jun 12, 2026Updated 4 months ago
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆21Jan 3, 2013Updated 13 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Precedent-based framework for evaluating reaction chemical plausibility☆20Sep 28, 2026Updated last month
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10May 16, 2024Updated 2 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆18Sep 29, 2026Updated last month
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆18Jan 7, 2020Updated 6 years ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated 5 months ago
- ☆10Mar 17, 2021Updated 5 years ago
- This is an updated version of the MolecularTransformer of Schwaller et. al.☆14Jan 17, 2022Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Standardard and dynamic enrichment analysis using the MBC Ontology☆11Oct 1, 2026Updated last month
- Implementation of a Hierarchical Mamba as described in the paper: "Hierarchical State Space Models for Continuous Sequence-to-Sequence Mo…☆16Nov 11, 2024Updated last year
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- ☆11Dec 15, 2023Updated 2 years ago
- Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data☆13Feb 20, 2026Updated 8 months ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 6 years ago
Are these results useful?