Software for exploration of gene expression data from single-cell RNA sequencing.
☆28Jun 20, 2019Updated 6 years ago
Alternatives and similar repositories for ExpressionMatrix2
Users that are interested in ExpressionMatrix2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).☆17Nov 14, 2019Updated 6 years ago
- starfish: unified pipelines for image-based transcriptomics☆248Jun 4, 2026Updated last week
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Feb 12, 2026Updated 4 months ago
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- ☆22Jul 4, 2017Updated 8 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 5 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Simple R client to UCSC Xena data hubs☆10Jun 1, 2015Updated 11 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Apr 17, 2024Updated 2 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 5 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- Extract, transform and load GDC data onto UCSC Xena☆13Oct 14, 2024Updated last year
- Tool to encode/decode .ipynb into .py files.☆17Jan 27, 2026Updated 4 months ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 10 months ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Nov 7, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SOMA PyTorch loaders☆14Sep 24, 2025Updated 8 months ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.☆17Apr 2, 2025Updated last year
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- A minimal and serverless data pipeline☆13Feb 22, 2022Updated 4 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Feb 11, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 7 years ago
- Super fast Git tree filtering.☆17Apr 1, 2024Updated 2 years ago
- HDF Explorer QT Edition is a multi-platfrom graphical browser for HDF5 files. http://www.space-research.org/☆10Aug 18, 2025Updated 9 months ago