chanzuckerberg / ExpressionMatrix2Links
Software for exploration of gene expression data from single-cell RNA sequencing.
☆28Updated 6 years ago
Alternatives and similar repositories for ExpressionMatrix2
Users that are interested in ExpressionMatrix2 are comparing it to the libraries listed below
Sorting:
- easy access to benchmark datasets☆50Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆24Updated 3 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Python implementation of the Loom file format - http://loompy.org☆147Updated 9 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 6 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Super small biological datasets for unit testing☆61Updated 5 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Core functionality of the CGAT code☆33Updated last month
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆21Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 7 months ago
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 4 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago