Alternatives and similar repositories for PySeq2500

Users that are interested in PySeq2500 are comparing it to the libraries listed below

• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆34Updated 2 months ago
• lifebit-ai / DeepVariant
  Deep Variant as a Nextflow pipeline
  ☆30Updated 5 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• data-science-sequencing / data-science-sequencing.github.io
  Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
  ☆68Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated last month
• tgen / MMRF_CoMMpass
  A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.
  ☆20Updated 2 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 5 months ago
• aidenlab / JuiceboxLegacy
  OLD REPOSITORY - Go to
  ☆31Updated 7 years ago
• pachterlab / qcbc
  ☆20Updated 3 months ago
• mhorlbeck / CRISPRiaDesign
  ☆37Updated 6 years ago
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆31Updated 5 months ago
• HumanCellAtlas / sctools
  Utilities for large scale distributed single cell data processing
  ☆24Updated last month
• mskcc-omics-workflows / modules
  A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…
  ☆11Updated this week
• sbooeshaghi / single-cell-vocabulary
  ☆26Updated last year
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆57Updated 4 months ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆33Updated 2 weeks ago
• eturro / mmseq
  Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
  ☆68Updated last year
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated 2 months ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆43Updated 9 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 4 months ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• TheJacksonLaboratory / splicing-pipelines-nf
  Repository for the Anczukow-Lab splicing pipeline
  ☆16Updated 5 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated this week
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆64Updated 11 months ago