Alternatives and similar repositories for PySeq2500

Users that are interested in PySeq2500 are comparing it to the libraries listed below

• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 3 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated 2 years ago
• ggirelli / iFISH-probe-design
  iFISH Probe Design: a Python3 package to build iFISH probes.
  ☆12Updated 3 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆44Updated 4 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated last month
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆35Updated last year
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 9 months ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆54Updated last month
• mskcc-omics-workflows / modules
  A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…
  ☆11Updated last week
• data-science-sequencing / data-science-sequencing.github.io
  Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
  ☆67Updated 4 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 7 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 2 years ago
• mhorlbeck / CRISPRiaDesign
  ☆38Updated 7 years ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆34Updated 5 months ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆28Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 4 months ago
• sbooeshaghi / single-cell-vocabulary
  ☆25Updated last year
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆65Updated 8 months ago
• broadinstitute / fiss
  FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
  ☆33Updated last week
• mikessh / migec
  A RepSeq processing swiss-knife
  ☆41Updated last year
• GryderArt / AQuA-HiChIP
  Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
  ☆12Updated 4 months ago
• b2jia / jie
  A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
  ☆18Updated 2 years ago
• rajewsky-lab / spacemake
  ☆48Updated this week
• billgreenwald / pgltools
  Paired Genomic Loci Tool Suite
  ☆34Updated 3 years ago
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆37Updated last year