eturro / mmseqLinks
Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
☆68Updated last year
Alternatives and similar repositories for mmseq
Users that are interested in mmseq are comparing it to the libraries listed below
Sorting:
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- BigWig and BAM utilities☆97Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- SeqMonk NGS visualisation and analysis tool☆49Updated last week
- Analysis from kallisto paper☆32Updated 9 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- GEM-Mapper v3☆57Updated 7 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago
- Merging paired-end reads and removing adapters☆46Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Evolutionary Transcriptomics with R☆45Updated this week