Alternatives and similar repositories for o2vae:

Users that are interested in o2vae are comparing it to the libraries listed below

• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆28Updated 9 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• yeung-lab / Micro-Bench
  A Vision-Language Benchmark for Microscopy Understanding
  ☆25Updated last month
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆81Updated 3 weeks ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆58Updated 5 months ago
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆21Updated 2 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆60Updated 2 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆19Updated last month
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆40Updated 3 weeks ago
• weigertlab / trackastra
  ☆69Updated 2 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 7 months ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆45Updated this week
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆85Updated last month
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last month
• joonkeekim / mediar-napari
  ☆20Updated last year
• instanseg / instanseg
  ☆156Updated this week
• HistAI / SPIDER
  SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …
  ☆19Updated 2 weeks ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆51Updated 9 months ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆62Updated 3 weeks ago
• AllenCell / aics-shparam
  ☆20Updated last week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 weeks ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆75Updated this week
• imyiningliu / cellstitch
  ☆10Updated last year
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• AllenCellModeling / cyto-dl
  ☆17Updated last week
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆110Updated this week
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆29Updated this week