jmhb0 / o2vaeLinks
[Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data
☆33Updated 3 months ago
Alternatives and similar repositories for o2vae
Users that are interested in o2vae are comparing it to the libraries listed below
Sorting:
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆63Updated last month
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆32Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 11 months ago
- Your Personal Assistant in Computational Bioimaging.☆42Updated 3 months ago
- computer vision models for single-cell phenotyping☆60Updated last week
- ☆63Updated 5 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆98Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 10 months ago
- MorphoFeatures code and data☆21Updated 2 years ago
- ☆32Updated 2 years ago
- A Vision-Language Benchmark for Microscopy Understanding☆26Updated 4 months ago
- Cell Painting Gallery☆94Updated 2 weeks ago
- ☆173Updated last week
- Cloud-based data annotation tools for biological images☆81Updated last year
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- ☆25Updated 2 weeks ago
- Transformer-based cell tracking for live-cell microscopy☆75Updated last month
- Python package for processing image-based profiling data☆120Updated this week
- Foundation Model for Multiplex Spatial Proteomic Images☆66Updated last month
- CellProfiler tutorial pipelines and images☆93Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆115Updated last week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆53Updated last year
- ☆20Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆73Updated 3 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 5 months ago