vadimnazarov / kidera-atchley

Related projects ⓘ

Alternatives and complementary repositories for kidera-atchley

• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆31Updated 3 months ago
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago
• statbiophys / soNNia
  ☆13Updated last week
• pinellolab / PrimeDesign
  Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
  ☆22Updated 2 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 3 years ago
• pmeysman / TCRclusteringPaper
  Comparative evaluation of different methods for TCR clustering
  ☆12Updated 6 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆32Updated 2 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆17Updated last year
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆41Updated 8 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆50Updated 4 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆16Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆62Updated this week
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆23Updated last year
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆25Updated 4 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆41Updated last week
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆35Updated last year
• mariodosreis / tai
  The tRNA adaptation index
  ☆15Updated 2 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated last week
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 3 months ago
• briney / abtools
  Analysis of antibody NGS data
  ☆12Updated 2 years ago
• fraenkel-lab / OmicsIntegrator
  This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…
  ☆31Updated 5 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆89Updated last month
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆45Updated 3 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆35Updated 3 weeks ago
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆35Updated 5 years ago