bozdaglab / SUPREMELinks
SUPREME: A GCN based approach for cancer subtype prediction
☆18Updated 2 years ago
Alternatives and similar repositories for SUPREME
Users that are interested in SUPREME are comparing it to the libraries listed below
Sorting:
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ☆33Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 5 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated last year
- Functional Embedding of Gene Signatures☆46Updated last year
- NeST-VNN repo☆12Updated 2 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- ☆27Updated 4 months ago
- ☆22Updated 7 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆47Updated 10 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆14Updated 2 years ago
- ☆30Updated 3 years ago
- Interpretable splicing model☆20Updated 2 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆14Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated 2 weeks ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 10 months ago
- dataloaders for state-sets models☆21Updated last week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Code and example of the D-SPIN framework☆23Updated 3 weeks ago
- ☆39Updated 2 years ago
- ☆19Updated 4 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 8 months ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago