bozdaglab / SUPREMELinks
SUPREME: A GCN based approach for cancer subtype prediction
☆18Updated 2 years ago
Alternatives and similar repositories for SUPREME
Users that are interested in SUPREME are comparing it to the libraries listed below
Sorting:
- NeST-VNN repo☆12Updated 6 months ago
- Biological Network Integration using Convolutions☆63Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 7 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- ☆28Updated 8 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- ☆33Updated 3 years ago
- Tutorials for multimodal omics data analysis☆18Updated 10 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆76Updated 9 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 4 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆76Updated last year
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆21Updated 4 years ago
- A deep-learning framework for multi-omics integration☆31Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Graph Neural Network model for survival analysis from multi-omics data☆14Updated 3 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆17Updated 4 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Updated last year
- ☆97Updated last month
- ☆19Updated 5 years ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- ☆30Updated 4 years ago