BodenmillerGroup / readimcLinks
Python package for reading imaging mass cytometry (IMC) files
☆15Updated this week
Alternatives and similar repositories for readimc
Users that are interested in readimc are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆92Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆36Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 11 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆81Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆30Updated this week
- ☆19Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 3 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆28Updated last month
- ☆35Updated last month
- ☆63Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆47Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 8 months ago
- R package for visualization of highly multiplexed imaging data☆32Updated last month
- ☆14Updated 3 years ago
- R based workflow for multiplexed imaging data☆32Updated this week
- Integrated pipeline for multiplexed image analysis☆91Updated 3 months ago
- ☆53Updated last year
- Interactive applications of stlearn☆15Updated 2 years ago
- Spatial analysis of FISH data☆30Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 4 months ago
- Image Mass Cytometry analysis pipeline☆26Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆126Updated 2 weeks ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago