Python package for reading imaging mass cytometry (IMC) files
☆20Oct 26, 2026Updated this week
Alternatives and similar repositories for readimc
Users that are interested in readimc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated 3 months ago
- A toolkit for processing multiplexed tissue images☆70Oct 19, 2026Updated last week
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- R based workflow for multiplexed imaging data☆39Mar 20, 2026Updated 7 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pixel classification based multiplexed image segmentation pipeline☆108Dec 5, 2023Updated 2 years ago
- A tiny Python library for writing multi-channel TIFF stacks.☆31Oct 19, 2026Updated last week
- IMC_Denoise: a software package to enhance Imaging Mass Cytometry - Nature Communications☆55Aug 14, 2024Updated 2 years ago
- A napari plugin to view and edit layer metadata☆14Updated this week
- ☆12Updated this week
- An R package for handling and analysing imaging mass cytometry data☆33Oct 6, 2026Updated 3 weeks ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated last year
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 4 months ago
- ☆16Jan 22, 2026Updated 9 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- Quantification module for mcmicro☆11Apr 1, 2025Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated 2 months ago
- ☆22Aug 9, 2026Updated 2 months ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆26Jun 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆71Sep 19, 2025Updated last year
- A package for the analysis of Imaging Mass Cytometry data☆17Mar 25, 2026Updated 7 months ago
- Process and analyze surfaces using vedo in napari.☆26May 13, 2024Updated 2 years ago
- ☆36Mar 30, 2025Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 3 years ago
- Example package that uses shinytest to test application created by a function☆16Mar 29, 2018Updated 8 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- ☆14Jun 1, 2026Updated 5 months ago
- ☆28Apr 4, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A self-supervised denoising algorithm.☆31Oct 5, 2026Updated 3 weeks ago
- CellProfiler plugins for multiplexed image analysis☆13Feb 16, 2021Updated 5 years ago
- ☆11Jul 15, 2024Updated 2 years ago
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- ☆16May 13, 2022Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week
- Console/curses English dictionary look-up tool with Anki integration☆10Jul 31, 2026Updated 3 months ago