Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
☆19Aug 18, 2023Updated 2 years ago
Alternatives and similar repositories for tailseeker
Users that are interested in tailseeker are comparing it to the libraries listed below
Sorting:
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Feb 16, 2026Updated 2 weeks ago
- ☆14Mar 18, 2016Updated 9 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 6 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 2 years ago
- ☆19May 13, 2023Updated 2 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆82May 24, 2020Updated 5 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated last month
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 6 years ago
- Specifications for PacBio® native file formats☆31Nov 19, 2024Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36May 2, 2023Updated 2 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆10Feb 6, 2020Updated 6 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Declarative function argument checks☆32Mar 12, 2016Updated 9 years ago
- ☆40Sep 29, 2022Updated 3 years ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…☆40Jul 14, 2025Updated 7 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Feb 11, 2026Updated 3 weeks ago
- ☆11Oct 11, 2024Updated last year
- This is the site where we store shared code for the Michigan Mycology Lab☆15Apr 10, 2024Updated last year
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Very WIP Casio Loopy emulator☆11Oct 24, 2018Updated 7 years ago
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 4 years ago
- False discovery rate regression☆10Nov 12, 2020Updated 5 years ago
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 2 years ago
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- ☆11Dec 17, 2025Updated 2 months ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago