Ensembl / VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
☆144Updated this week
Alternatives and similar repositories for VEP_plugins:
Users that are interested in VEP_plugins are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- VarDict☆194Updated last year
- ABRA2☆92Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆183Updated this week
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Gene fusion detection and visualization☆122Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- ASCAT R package☆176Updated this week
- Annotation and Ranking of Structural Variation☆248Updated 2 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- Annotates variants in MAF with OncoKB annotation.☆127Updated 5 months ago
- ☆82Updated 6 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated this week
- Structural variation and indel detection by local assembly☆244Updated last week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A Python package for pharmacogenomics (PGx) research☆68Updated last month
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- Software program for checking sample matching for NGS data☆129Updated 9 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Bayesian haplotype-based mutation calling☆307Updated last week
- Precision HLA typing from next-generation sequencing data☆196Updated last year