Plugins for the Ensembl Variant Effect Predictor (VEP)
☆171Sep 8, 2026Updated last week
Alternatives and similar repositories for VEP_plugins
Users that are interested in VEP_plugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆572Updated this week
- ☆201Jun 20, 2023Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- The Ensembl Variation Perl API and SQL schema☆30Aug 3, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated 4 months ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 5 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆83Jun 30, 2025Updated last year
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 11 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆334Sep 9, 2026Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆420May 25, 2026Updated 3 months ago
- ☆188Updated this week
- A Tool to Annotate and Prioritize Exome Variants☆265Aug 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ensembl tools☆34Nov 3, 2025Updated 10 months ago
- MuSiCa - Mutational Signatures in Cancer☆22Dec 23, 2023Updated 2 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 6 months ago
- Haplotype VCF comparison tools☆472Dec 7, 2023Updated 2 years ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆213May 28, 2023Updated 3 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆536Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VarDict☆204Jan 5, 2024Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆95Oct 30, 2025Updated 10 months ago
- Personal Cancer Genome Reporter (PCGR)☆283Updated this week
- Lollipop-style mutation diagrams for annotating genetic variations.☆203Sep 20, 2024Updated last year
- Java utilities for Bioinformatics☆525Updated this week
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆685Mar 20, 2026Updated 6 months ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆19Dec 16, 2025Updated 9 months ago
- Research pipeline for exploring clinically relevant genomic variants☆18Jul 20, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆878Sep 3, 2026Updated 2 weeks ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆891Sep 10, 2026Updated last week
- Python function for TMB snake plots☆16Feb 12, 2026Updated 7 months ago
- Tools for working with genomic and high throughput sequencing data.☆372Aug 20, 2026Updated last month
- Official code repository for GATK versions 4 and up☆2,000Updated this week
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆277Sep 21, 2025Updated 11 months ago