Ensembl / VEP_pluginsLinks
Plugins for the Ensembl Variant Effect Predictor (VEP)
☆163Updated 2 weeks ago
Alternatives and similar repositories for VEP_plugins
Users that are interested in VEP_plugins are comparing it to the libraries listed below
Sorting:
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆174Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Learning the Variant Call Format☆148Updated 4 months ago
- The nimble & robust variant annotator☆188Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- VarDict☆201Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Gene fusion detection and visualization☆131Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 5 months ago
- A structural variation pipeline for short-read sequencing☆199Updated last week
- Fast HLA type inference from whole-genome data☆141Updated 8 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated 2 weeks ago
- Software program for checking sample matching for NGS data☆137Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- A small-RNA sequencing analysis pipeline☆98Updated last week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 4 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆184Updated last week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 4 months ago