Plugins for the Ensembl Variant Effect Predictor (VEP)
☆170Aug 3, 2026Updated last week
Alternatives and similar repositories for VEP_plugins
Users that are interested in VEP_plugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆566Updated this week
- ☆200Jun 20, 2023Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆869May 2, 2026Updated 3 months ago
- The Ensembl Variation Perl API and SQL schema☆30Aug 3, 2026Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated 2 months ago
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 3 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆84Jun 30, 2025Updated last year
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 9 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆332Jul 20, 2026Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆419May 25, 2026Updated 2 months ago
- ☆183Jul 27, 2026Updated 2 weeks ago
- A Tool to Annotate and Prioritize Exome Variants☆262Aug 3, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Ensembl tools☆34Nov 3, 2025Updated 9 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆345Feb 22, 2026Updated 5 months ago
- Haplotype VCF comparison tools☆472Dec 7, 2023Updated 2 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- Annotation and Ranking of Structural Variation☆307Jun 19, 2026Updated last month
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆212May 28, 2023Updated 3 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆265Jun 17, 2024Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆528Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- VarDict☆204Jan 5, 2024Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆93Oct 30, 2025Updated 9 months ago
- Personal Cancer Genome Reporter (PCGR)☆280Updated this week
- Lollipop-style mutation diagrams for annotating genetic variations.☆202Sep 20, 2024Updated last year
- Java utilities for Bioinformatics☆524Jul 24, 2026Updated 2 weeks ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆683Mar 20, 2026Updated 4 months ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆19Dec 16, 2025Updated 7 months ago
- Research pipeline for exploring clinically relevant genomic variants☆17Jul 20, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆876Apr 20, 2026Updated 3 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆883Jul 30, 2026Updated last week
- Python function for TMB snake plots☆16Feb 12, 2026Updated 5 months ago
- Tools for working with genomic and high throughput sequencing data.☆372Updated this week
- Official code repository for GATK versions 4 and up☆1,981Updated this week
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆273Sep 21, 2025Updated 10 months ago