Ensembl / VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
☆141Updated this week
Related projects ⓘ
Alternatives and complementary repositories for VEP_plugins
- A structural variation pipeline for short-read sequencing☆171Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆153Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆198Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆122Updated 4 years ago
- Annotation and Ranking of Structural Variation☆217Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated last week
- VarDict☆187Updated 10 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆204Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆255Updated 10 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆162Updated 4 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆122Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆111Updated 2 weeks ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆188Updated 3 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆151Updated 2 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆140Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆92Updated last month
- Discovering known and novel miRNAs from small RNA sequencing data☆138Updated 2 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- A small-RNA sequencing analysis pipeline☆74Updated 3 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆141Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆226Updated last week
- Precision HLA typing from next-generation sequencing data☆188Updated 8 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆151Updated this week
- A tool set for short variant discovery in genetic sequence data.☆192Updated 3 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆242Updated last year
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆149Updated last week