Plugins for the Ensembl Variant Effect Predictor (VEP)
☆174Oct 30, 2026Updated this week
Alternatives and similar repositories for VEP_plugins
Users that are interested in VEP_plugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆578Oct 21, 2026Updated last week
- ☆203Jun 20, 2023Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 6 months ago
- Ensembl tools☆34Nov 3, 2025Updated 11 months ago
- Annotation and Ranking of Structural Variation☆311Aug 11, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆215May 28, 2023Updated 3 years ago
- The Ensembl Variation Perl API and SQL schema☆31Sep 23, 2026Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆420May 25, 2026Updated 5 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆901Oct 26, 2026Updated last week
- Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104☆19Jul 14, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A deep learning-based tool to identify splice variants☆506Apr 3, 2026Updated 6 months ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- Haplotype VCF comparison tools☆475Dec 7, 2023Updated 2 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆341Oct 23, 2026Updated last week
- ☆192Oct 19, 2026Updated last week
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆339May 27, 2025Updated last year
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago
- Official code repository for GATK versions 4 and up☆2,009Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 8 months ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆295Updated this week
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆203Sep 20, 2024Updated 2 years ago
- The Ensembl Core Perl API and SQL schema☆85Sep 15, 2026Updated last month
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆83Jun 30, 2025Updated last year
- A method for identifying deleterious protein variation.☆11Nov 14, 2016Updated 9 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆687Oct 2, 2026Updated last month
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆538Oct 14, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆209Updated this week
- Copy number variant detection from targeted DNA sequencing☆617Oct 15, 2026Updated 2 weeks ago
- ☆36Mar 16, 2021Updated 5 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago