Ensembl / VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
☆144Updated last week
Alternatives and similar repositories for VEP_plugins:
Users that are interested in VEP_plugins are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- VarDict☆194Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- A structural variation pipeline for short-read sequencing☆182Updated this week
- Copy number calling and variant classification using targeted short read sequencing☆132Updated last month
- Structural variation and indel detection by local assembly☆242Updated 3 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Gene fusion detection and visualization☆121Updated 3 years ago
- ABRA2☆92Updated 2 years ago
- ☆82Updated 6 years ago
- Documentation and description of AWS iGenomes S3 resource.☆110Updated 3 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆198Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆123Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆266Updated last year
- Fast HLA type inference from whole-genome data☆135Updated 3 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆197Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆233Updated 4 months ago
- ASCAT R package☆175Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆100Updated 4 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆208Updated this week
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆144Updated 6 months ago
- Precision HLA typing from next-generation sequencing data☆196Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago