AlexandrovLab / SigProfilerExtractorLinks
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…
☆164Updated 2 weeks ago
Alternatives and similar repositories for SigProfilerExtractor
Users that are interested in SigProfilerExtractor are comparing it to the libraries listed below
Sorting:
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆190Updated last year
- ASCAT R package☆189Updated last month
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated 3 months ago
- ☆140Updated 6 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆226Updated 5 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated last month
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆225Updated last year
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆111Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- Application for making ENCODE Blacklists☆323Updated 4 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 3 weeks ago
- Single-Cell Genotyping Tool☆212Updated 2 years ago
- ☆116Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆115Updated 2 years ago
- ☆155Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆265Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 2 weeks ago
- ☆120Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆135Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆143Updated last year
- R package for DNA methylation analysis☆237Updated last month
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated 11 months ago
- FAN-C: Framework for the ANalysis of C-like data☆119Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆171Updated 5 months ago