Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
☆232Jun 1, 2024Updated last year
Alternatives and similar repositories for leafcutter
Users that are interested in leafcutter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 8 months ago
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Full-Length Alternative Isoform analysis of RNA☆250Mar 30, 2026Updated 2 weeks ago
- Command-line tool for the visualization of splicing events across multiple samples☆140Jun 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Aug 21, 2024Updated last year
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- PSI-Sigma☆40Nov 10, 2023Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 4 years ago
- ☆293Mar 4, 2026Updated last month
- Lightweight and Fast; RNA-seq quantification at the event-level☆116May 9, 2025Updated 11 months ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated 11 months ago
- Transcript assembly and quantification for RNA-Seq☆498Dec 26, 2025Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- Differential analysis of RNA-Seq☆312May 28, 2025Updated 10 months ago
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆91Jan 24, 2025Updated last year
- ☆39Apr 25, 2023Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆54Jul 17, 2024Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- Quality of RNA-Seq Toolset☆52Apr 9, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆127Mar 12, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 6 months ago
- ☆18May 31, 2024Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Enhanced version of the FastQTL QTL mapper☆72Mar 19, 2023Updated 3 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- ☆31Nov 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Near-optimal RNA-Seq quantification☆756Mar 16, 2026Updated 3 weeks ago
- Interval data structure☆236Mar 18, 2026Updated 3 weeks ago
- cython + htslib == fast VCF and BCF processing☆439Feb 23, 2026Updated last month
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆83Apr 3, 2026Updated last week
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago