davidaknowles / leafcutterLinks
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
☆226Updated last year
Alternatives and similar repositories for leafcutter
Users that are interested in leafcutter are comparing it to the libraries listed below
Sorting:
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ASCAT R package☆194Updated 3 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆194Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- IDR☆175Updated 7 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆230Updated 8 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆274Updated 2 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆157Updated 2 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆172Updated last week
- AQUAS TF and histone ChIP-seq pipeline☆112Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆127Updated 2 weeks ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆157Updated last year
- ☆145Updated 7 years ago
- ☆157Updated 7 months ago
- Various algorithms for analysing genomics data☆261Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 4 months ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆209Updated last week
- R package for DNA methylation analysis☆245Updated 4 months ago