davidaknowles / leafcutterLinks
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
☆224Updated last year
Alternatives and similar repositories for leafcutter
Users that are interested in leafcutter are comparing it to the libraries listed below
Sorting:
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ASCAT R package☆189Updated 2 weeks ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆225Updated 4 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆263Updated 2 weeks ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆188Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- ☆139Updated 6 years ago
- ☆155Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Generate IGV style locus tracks from bigWig files in R☆171Updated 11 months ago
- IDR☆172Updated 7 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆153Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆168Updated 4 months ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated 3 weeks ago
- Application for making ENCODE Blacklists☆321Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆239Updated last week
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆204Updated 2 weeks ago