davidaknowles / leafcutterLinks
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
☆225Updated last year
Alternatives and similar repositories for leafcutter
Users that are interested in leafcutter are comparing it to the libraries listed below
Sorting:
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆226Updated 5 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆190Updated last year
- ASCAT R package☆189Updated last month
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆115Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆266Updated last month
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated 11 months ago
- ☆141Updated 6 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 3 weeks ago
- IDR☆173Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated last month
- ☆155Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆171Updated 5 months ago
- R package for DNA methylation analysis☆238Updated last month
- ☆153Updated 5 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Application for making ENCODE Blacklists☆324Updated 4 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆164Updated 3 weeks ago