Alternatives and similar repositories for gcta

Users that are interested in gcta are comparing it to the libraries listed below

• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆128Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆96Updated last month
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆85Updated last month
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆53Updated 6 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆77Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated 3 weeks ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆63Updated last month
• limix / limix
  Linear mixed model for genomic analyses.
  ☆111Updated 4 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆54Updated 4 months ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆97Updated 10 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆83Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆50Updated 3 years ago
• bvilhjal / ldpred
  ☆102Updated 3 years ago
• zhilizheng / SBayesRC
  ☆46Updated 6 months ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆196Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆51Updated 8 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆62Updated 2 months ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆100Updated 7 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆72Updated 2 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆91Updated 3 years ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆92Updated 7 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆115Updated 3 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 2 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 2 weeks ago
• FinucaneLab / pops
  ☆87Updated 5 months ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆72Updated 4 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆63Updated last year
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 3 weeks ago