Alternatives and similar repositories for gcta

Users that are interested in gcta are comparing it to the libraries listed below

• limix / limix
  Linear mixed model for genomic analyses.
  ☆107Updated 4 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 9 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆90Updated 10 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆49Updated 5 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated last month
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆82Updated last week
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆82Updated 2 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated 2 weeks ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• bvilhjal / ldpred
  ☆99Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆190Updated 2 months ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆189Updated 10 months ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆95Updated 7 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated 2 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆185Updated 2 weeks ago
• PMBio / peer
  A factor analysis package
  ☆101Updated 13 years ago
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 6 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆55Updated 4 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆49Updated 5 months ago
• rgcgithub / regenie
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
  ☆231Updated 3 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 4 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆88Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆122Updated 3 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆48Updated 2 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 9 months ago
• zhilizheng / SBayesRC
  ☆43Updated 3 months ago
• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago