Alternatives and similar repositories for gcta

Users that are interested in gcta are comparing it to the libraries listed below

• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆105Updated 4 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆67Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆66Updated 8 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆116Updated this week
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 4 months ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated last month
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated 2 weeks ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆181Updated 3 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• monogenea / GWAStutorial
  Genome-wide association studies tutorial 🧬
  ☆49Updated 5 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆45Updated last week
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated this week
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 6 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆78Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated 3 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆28Updated 5 years ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆141Updated 3 years ago