nf-core / rnadnavarLinks
Pipeline for RNA and DNA integrated analysis for somatic mutation detection
☆14Updated 3 weeks ago
Alternatives and similar repositories for rnadnavar
Users that are interested in rnadnavar are comparing it to the libraries listed below
Sorting:
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- ☆13Updated 8 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- Micro DNA identification☆23Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Define regions in the genome☆33Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 11 months ago
- ☆34Updated 2 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆37Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆24Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 3 weeks ago
- ☆14Updated 2 years ago
- ☆23Updated 4 years ago
- ☆39Updated 4 years ago