ratschlab / Project2020-seq-tensor-sketching
☆8Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Project2020-seq-tensor-sketching
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated this week
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆24Updated this week
- Fast and exact gap-affine partial order alignment☆40Updated last week
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Rust implementation of VG handle graph☆18Updated 10 months ago
- Rust implementation of ekg's dozyg☆9Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆23Updated 2 months ago
- GBWT in Rust☆42Updated 2 months ago
- sequence to graph mapper☆11Updated 3 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated last month
- Optimal distance lower bound k-mer sampling.☆12Updated 4 months ago
- Compacted and colored de Bruijn graph construction and querying☆74Updated last week
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆43Updated this week
- Rust wrapper for the next generation (still currently in C++)☆20Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last week
- Benchmarking pairwise aligners☆36Updated 7 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- ☆17Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 5 months ago
- ☆13Updated last year
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆10Updated 5 years ago
- Extracting paths from assembly graphs☆22Updated 6 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆22Updated 2 years ago
- Statistics and analysis for variation graphs☆31Updated 3 weeks ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆50Updated 2 months ago