JCVenterInstitute / NSForestLinks
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
☆62Updated last month
Alternatives and similar repositories for NSForest
Users that are interested in NSForest are comparing it to the libraries listed below
Sorting:
- ☆49Updated 7 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆48Updated last week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆60Updated last year
- .h5mu files interface for Seurat☆32Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 5 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- ☆52Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- ☆46Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆71Updated 4 months ago
- ☆61Updated 5 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆53Updated last month
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- ☆35Updated 3 months ago
- ☆52Updated 9 months ago