rahi-lab / YeaZ-GUILinks
An interactive tool for segmenting yeast cells using deep learning.
☆28Updated last month
Alternatives and similar repositories for YeaZ-GUI
Users that are interested in YeaZ-GUI are comparing it to the libraries listed below
Sorting:
- Microscopy Image Cytometry Toolkit☆116Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆67Updated last week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆179Updated this week
- Cell tracker designed for tracking intestinal organoids☆26Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated last year
- Find profile pairs and compute metrics between them.☆17Updated 2 weeks ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- The ImageJ plugin to run deep-learning models☆97Updated last week
- CytoData 2016 – origin story☆18Updated 7 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 6 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 3 months ago
- TrackMate is your buddy for your everyday tracking.☆199Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 10 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 5 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- CellProfiler tutorial pipelines and images☆93Updated 2 months ago
- Open source Python library for building bioimage analysis pipelines☆178Updated this week
- The Fluorescent Protein Database☆69Updated last week
- ☆39Updated 11 months ago
- Python package for processing image-based profiling data☆120Updated this week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆115Updated last week
- Methods for Image-Based Cell Profiling☆51Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago