☆27Apr 17, 2019Updated 7 years ago
Alternatives and similar repositories for collaboration
Users that are interested in collaboration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python implementation of edgeR for differential expression analysis☆105Mar 21, 2019Updated 7 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆96Dec 13, 2024Updated last year
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identify Organisms from a Stream of DNA Sequences☆13Mar 3, 2016Updated 10 years ago
- scripts to automate illumina secondary analysis pipeline☆10Nov 2, 2019Updated 6 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- Nextflow language support for Visual Studio Editor☆38Oct 22, 2026Updated last week
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- Port of Python's os.path☆19Feb 6, 2017Updated 9 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 7 years ago
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 6 years ago
- Generate beautiful API documentation for Nextflow pipelines☆19Aug 9, 2026Updated 2 months ago
- The Nextflow language server☆32Updated this week
- An experimental AI agent workflow.☆17Oct 11, 2025Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31Oct 13, 2026Updated 2 weeks ago
- Parsers to wrangle the plethora of biological flatfile formats into standard JSON☆10May 20, 2011Updated 15 years ago
- This repository hosts a large collection of Nextflow snippets☆55Jan 26, 2025Updated last year
- ☆10Oct 30, 2018Updated 8 years ago
- This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendri…☆16May 19, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Automatically exported from code.google.com/p/exercisesheet☆11Dec 17, 2015Updated 10 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School☆10Mar 7, 2017Updated 9 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 8 years ago
- Annotating epigenetic variation among samples with region sets in R☆11Jan 18, 2025Updated last year
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Edinburgh Genomics MinION training 2016☆33Oct 26, 2016Updated 10 years ago
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 4 years ago
- * -> TSV☆26Oct 23, 2026Updated last week
- linear time suffix array construction algorithm☆11Oct 28, 2016Updated 10 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Jan 6, 2021Updated 5 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago