scripts to automate illumina secondary analysis pipeline
☆10Nov 2, 2019Updated 7 years ago
Alternatives and similar repositories for illuminati
Users that are interested in illuminati are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at th…☆10Updated this week
- Color Chart in R☆10Feb 8, 2015Updated 11 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18May 14, 2018Updated 8 years ago
- ☆14Jun 14, 2026Updated 4 months ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- A repo as an early attempt of my PhD thesis and discarded later. For my actual thesis, see☆13Apr 12, 2012Updated 14 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆59May 17, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Oct 21, 2026Updated 2 weeks ago
- ☆10Feb 28, 2018Updated 8 years ago
- ☆10Jun 21, 2015Updated 11 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 5 years ago
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.☆11Apr 15, 2022Updated 4 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Sep 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆11Mar 10, 2026Updated 7 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 8 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Parse Illumina sample sheets with Python☆51Mar 20, 2024Updated 2 years ago
- Visualizing Hypothesis Tests in Multivariate Linear Models☆14Oct 31, 2026Updated last week
- Small tutorial example of an AWS Lambda custom runtime in Rust☆10Oct 25, 2020Updated 6 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Updated this week
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- https://twitter.com/_Jana_Marie/status/1245725762642206728☆12Jan 9, 2022Updated 4 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago