Parsers to wrangle the plethora of biological flatfile formats into standard JSON
☆10May 20, 2011Updated 15 years ago
Alternatives and similar repositories for BioJSON
Users that are interested in BioJSON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- ☆11Jan 11, 2019Updated 7 years ago
- generate spot-it cards☆10Jun 13, 2015Updated 11 years ago
- Ultrafast VCF GenoType Compressor (GTC) with instant random access, shrinking the 4.3 TB HRC dataset (27k samples, 40M variants) down to …☆16Oct 5, 2026Updated 2 weeks ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bitpacked sequence trait and implementation☆19Oct 4, 2026Updated 2 weeks ago
- Background compilation, completion, bib serch, toc and other nice features.☆12Feb 3, 2013Updated 13 years ago
- An example of building a shared library (.so) in Haskell and calling it from C and Python.☆10Aug 30, 2012Updated 14 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- A research blogging tool written in Python using Flask.☆12Jun 18, 2014Updated 12 years ago
- Haskell bindings to Advent of Code REST API☆16Sep 29, 2026Updated 3 weeks ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 4 months ago
- Markdownloader makes it possible to fetch articles directly from the web. Inspired by the popular outline.com, it also ditches paywalls i…☆16Nov 5, 2021Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Haskell: Overengineered GHCJS + react-flux playground☆14Jan 24, 2017Updated 9 years ago
- ISBL - Information Systems Base Language☆19Sep 21, 2014Updated 12 years ago
- ☆18Jul 24, 2025Updated last year
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆47Aug 28, 2026Updated last month
- Config files for my GitHub profile.☆17Apr 20, 2026Updated 6 months ago
- Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse☆12Feb 22, 2024Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Generate 3d box geometry☆10Jan 5, 2016Updated 10 years ago
- GTDB => NCBI☆16Nov 14, 2024Updated last year
- ✂️ Shakes out any unused functions from your GLSL shaders☆13Jun 30, 2016Updated 10 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- ☆16Jul 13, 2014Updated 12 years ago
- Toolkit for Psychological Analysis and Modeling in R☆11Nov 7, 2025Updated 11 months ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- A PostgreSQL backed queue☆16Jan 21, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate a model matrix from position, scale, and rotation vectors.☆11Oct 3, 2016Updated 10 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- A big integer rational number☆15Jan 24, 2019Updated 7 years ago
- Custom Dash component to make pyLDAvis available in the Dash framework☆13Jun 6, 2018Updated 8 years ago
- HTTP handler for serving browserify bundles☆16Aug 31, 2014Updated 12 years ago
- Test your GLSL shaders using GLSL!☆15Aug 20, 2017Updated 9 years ago
- Toolchest Python client☆15Sep 6, 2023Updated 3 years ago