gatk-workflows / gatk4-jupyter-notebook-tutorials
This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
☆24Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for gatk4-jupyter-notebook-tutorials
- Clinical interpretation of somatic mutations in cancer☆42Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Generic human DNA variant annotation pipeline☆56Updated 9 months ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Burden testing against public controls☆50Updated 8 months ago
- ☆23Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 8 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆32Updated 3 years ago
- ☆19Updated 5 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 4 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆74Updated last week
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated last month
- for visual evaluation of read support for structural variation☆50Updated 5 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Master of Pores 2☆23Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- Phenotype driven gene prioritization for HPO☆44Updated 3 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆37Updated 2 years ago
- Website to analyze conflicting assertions in ClinVar☆16Updated 9 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- ☆51Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago