gatk-workflows / gatk4-jupyter-notebook-tutorialsLinks
This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
☆26Updated 6 years ago
Alternatives and similar repositories for gatk4-jupyter-notebook-tutorials
Users that are interested in gatk4-jupyter-notebook-tutorials are comparing it to the libraries listed below
Sorting:
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 4 months ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Phenotype driven gene prioritization for HPO☆51Updated 4 years ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- Python package to annotate and visualize gene fusions.☆65Updated last year
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- ☆24Updated this week
- Burden testing against public controls☆50Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- ☆51Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last month
- ☆69Updated 3 years ago
- Tumor Mutational Burden☆63Updated 5 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago