Alternatives and similar repositories for teemi:

Users that are interested in teemi are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆121Updated 3 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆29Updated 4 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆33Updated 3 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆75Updated this week
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆88Updated 6 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆73Updated last week
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆41Updated 2 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆70Updated 5 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆74Updated last month
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆161Updated this week
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 8 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated last month
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆22Updated this week
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆43Updated 2 weeks ago
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 11 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆89Updated last year
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆27Updated 2 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆71Updated this week
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆39Updated 9 months ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆30Updated 10 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 3 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆55Updated 4 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated last month
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 5 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• proteinphysiologylab / frustratometeR
  ☆34Updated 5 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆95Updated last month