hiyama341 / teemiLinks
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆41Updated last week
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆156Updated 10 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆192Updated 2 weeks ago
- Protein 3D structure prediction pipeline☆86Updated this week
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated last week
- MMseqs2 app to run on your workstation or servers☆97Updated 2 weeks ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 11 months ago
- A pipeline to build similarity maps of protein space☆39Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆178Updated 3 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆105Updated last month
- snakemake pipeline for creating trees from sequence sets☆91Updated last week
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 5 months ago
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 3 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆74Updated last month
- Cython bindings and Python interface to HMMER3.☆148Updated this week
- Deep networks for protein functional inference☆177Updated 4 months ago
- 1D Feature Viewer☆53Updated 3 weeks ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆73Updated 2 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆113Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆55Updated 6 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Fast protein structure searching or your money back☆114Updated 2 weeks ago
- A tool for protein and protein complex structure prediction.☆29Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆56Updated 10 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago