hiyama341 / teemiLinks
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆42Updated 4 months ago
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below
Sorting:
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆95Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆132Updated 6 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆175Updated 2 months ago
- Models, design algorithms, and other software related to Salis lab publications☆34Updated 7 months ago
- MMseqs2 app to run on your workstation or servers☆84Updated this week
- A domain parser for Alphafold models☆38Updated last year
- snakemake pipeline for creating trees from sequence sets☆79Updated last month
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆45Updated 2 weeks ago
- ☆36Updated 8 months ago
- Protein 3D structure prediction pipeline☆81Updated 2 weeks ago
- Enzyme-constrained genome-scale models in python☆28Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆74Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆112Updated 9 months ago
- a pipeline to build similarity maps of protein space☆35Updated 6 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆56Updated 3 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 6 months ago
- UniProt Id Mapping through API☆34Updated 8 months ago
- ☆40Updated 9 months ago
- ☆31Updated last year
- ☆49Updated 2 months ago
- Fast protein structure searching or your money back☆103Updated 2 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆48Updated 2 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated 2 weeks ago
- ☆31Updated 3 years ago