hiyama341 / teemiLinks
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆42Updated 6 months ago
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆147Updated 9 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆186Updated last week
- a pipeline to build similarity maps of protein space☆36Updated 8 months ago
- Protein 3D structure prediction pipeline☆86Updated last week
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 9 months ago
- MMseqs2 app to run on your workstation or servers☆92Updated this week
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆101Updated last month
- snakemake pipeline for creating trees from sequence sets☆85Updated 3 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆77Updated 3 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆70Updated last week
- Deep networks for protein functional inference☆176Updated 2 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- Cython bindings and Python interface to HMMER3.☆146Updated last week
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated last month
- Evolutionary velocity with protein language models☆94Updated last year
- Fast protein structure searching or your money back☆111Updated 4 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- Protein structure comparison tools such as SSAP and SNAP☆65Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆194Updated this week
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated last month
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago