hiyama341 / teemiLinks
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆42Updated last week
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆173Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆207Updated 3 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated 2 months ago
- Protein 3D structure prediction pipeline☆95Updated this week
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- MMseqs2 app to run on your workstation or servers☆103Updated this week
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 3 weeks ago
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆112Updated 4 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 3 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆47Updated last month
- Fast protein structure searching or your money back☆118Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 9 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- snakemake pipeline for creating trees from sequence sets☆95Updated 3 months ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆64Updated 8 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputers☆71Updated 2 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆116Updated 3 years ago
- Cython bindings and Python interface to HMMER3.☆155Updated this week