Alternatives and similar repositories for teemi

Users that are interested in teemi are comparing it to the libraries listed below

• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆93Updated last month
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆84Updated last year
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆125Updated 5 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 2 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆170Updated 3 weeks ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆79Updated last week
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated last month
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• ncbi / SSDraw
  ☆85Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆77Updated 3 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆36Updated last year
• mattarnoldbio / alphapickle
  ☆31Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆36Updated last week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆53Updated 5 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆102Updated last month
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 7 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆71Updated last week
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆53Updated 2 months ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆28Updated 2 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 5 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆22Updated 5 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆32Updated 6 months ago
• JudeWells / chainsaw
  ☆38Updated 7 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆105Updated 8 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆80Updated this week
• tymor22 / tm-vec
  ☆68Updated 7 months ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• proteinphysiologylab / frustratometeR
  ☆36Updated 7 months ago