teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆46Apr 27, 2026Updated 5 months ago
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- ☆13Jun 11, 2025Updated last year
- ☆11Oct 21, 2023Updated 2 years ago
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Framework for Object Oriented Modelling of Bioprocesses☆18Feb 18, 2021Updated 5 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Feb 29, 2024Updated 2 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆231Updated this week
- DNA overhang misannealing data for Python☆13May 15, 2025Updated last year
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 6 years ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 6 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 7 months ago
- ☆24Oct 19, 2023Updated 2 years ago
- ☆16May 1, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 4 months ago
- Models, design algorithms, and other software related to Salis lab publications☆38Aug 5, 2026Updated last month
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆47Sep 20, 2020Updated 6 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆48May 12, 2026Updated 4 months ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated 2 years ago
- a DNA assembly library☆23Aug 13, 2025Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆14Aug 12, 2026Updated last month
- A novel molecular representation framework via meta structures☆20Nov 25, 2025Updated 10 months ago
- Augmenting Polymer Datasets via Iterative Rearrangement☆13Jun 30, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Colony counting for CS4641☆18Jul 17, 2020Updated 6 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- VMD Plugin and associated scripts to build lignin structures from topological specifications☆17Jul 17, 2025Updated last year
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- ☆10Oct 30, 2018Updated 7 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- A simple python web app to visualise google location history☆16Jul 16, 2024Updated 2 years ago
- ☆16May 8, 2026Updated 4 months ago
- An Open-Source web application to plan and document cloning and genome engineering☆57Sep 21, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆33Nov 7, 2024Updated last year
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Frontend for evaluating humans on chemistry questions☆11Sep 1, 2024Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16May 24, 2023Updated 3 years ago