teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
☆44Apr 27, 2026Updated 2 months ago
Alternatives and similar repositories for teemi
Users that are interested in teemi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- ☆13Jun 11, 2025Updated last year
- Python library to visualize circular plasmid maps☆27Dec 12, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Framework for Object Oriented Modelling of Bioprocesses☆18Feb 18, 2021Updated 5 years ago
- Code repository for paper "Generative artificial intelligence GPT-4 accelerates knowledge mining and machine learning for synthetic biolo…☆13May 14, 2023Updated 3 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆19Feb 29, 2024Updated 2 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆229Updated this week
- DNA overhang misannealing data for Python☆13May 15, 2025Updated last year
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 5 years ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 3 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 5 months ago
- ☆24Oct 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15May 1, 2025Updated last year
- Models, design algorithms, and other software related to Salis lab publications☆38Nov 6, 2024Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 2 months ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆47Sep 20, 2020Updated 5 years ago
- A novel molecular representation framework via meta structures☆18Nov 25, 2025Updated 7 months ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 4 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆48May 12, 2026Updated 2 months ago
- a DNA assembly library☆23Aug 13, 2025Updated 11 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆14Jun 9, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Augmenting Polymer Datasets via Iterative Rearrangement☆13Jun 30, 2023Updated 3 years ago
- Colony counting for CS4641☆18Jul 17, 2020Updated 6 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated 11 months ago
- Symbolic Kinetic Models with Python☆37Jun 4, 2025Updated last year
- ☆10Oct 30, 2018Updated 7 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- A simple python web app to visualise google location history☆16Jul 16, 2024Updated 2 years ago
- Base image providing dependencies for ASKCOS Docker images☆12Jun 14, 2024Updated 2 years ago
- ☆15May 8, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An Open-Source web application to plan and document cloning and genome engineering☆55Jun 5, 2026Updated last month
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆32Nov 7, 2024Updated last year
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- The funny insult device for everyday use.☆16May 10, 2026Updated 2 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago