Plasmid annotation pipeline
☆17Oct 1, 2025Updated 10 months ago
Alternatives and similar repositories for PlasAnn
Users that are interested in PlasAnn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 1, 2025Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated last month
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 6 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 2 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated last month
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆94Jul 23, 2026Updated last month
- A genome diagram generator for microbes and organelles☆146Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Aug 11, 2026Updated 2 weeks ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆42Updated this week
- A comprehensive prokaryotic genome annotation pipeline☆91Aug 18, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 10 months ago
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 5 months ago
- ☆11Jun 29, 2023Updated 3 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Updated this week
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12May 6, 2021Updated 5 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Jul 21, 2026Updated last month
- Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequ…☆23Updated this week
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆235Updated this week
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Fast DNA search and [host] depletion using minimizers☆125Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆15Jul 24, 2026Updated last month
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 8 months ago
- ☆16May 21, 2026Updated 3 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- ☆116Updated this week
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 6 months ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago