Download all EpiCoV sequcnes from GISAID
☆32Jun 21, 2022Updated 4 years ago
Alternatives and similar repositories for EpiCoV_downloader
Users that are interested in EpiCoV_downloader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A selenium spider for GISAID☆11Apr 10, 2023Updated 3 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- ☆16Oct 2, 2019Updated 7 years ago
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41May 22, 2023Updated 3 years ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆46Sep 4, 2026Updated last month
- FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2☆15Aug 12, 2025Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framew…☆13Oct 27, 2024Updated 2 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 6 months ago
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆24Dec 12, 2020Updated 5 years ago
- HIVdb webservice client☆13Jan 22, 2026Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Dec 9, 2025Updated 10 months ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆24Jan 29, 2019Updated 7 years ago
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- RNA-seq, QC and differential analysis pipeline☆18Aug 27, 2026Updated 2 months ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆16Mar 6, 2018Updated 8 years ago
- The ARTIC fieldbioinformatics pipeline☆136Aug 26, 2026Updated 2 months ago
- ☆20Nov 18, 2021Updated 4 years ago
- Data on prevalence of variants of concern in Aotearoa New Zealand☆12Feb 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- IMSA+A is an extension of Arron-IMSA program for metagenomic taxonomic classificiation using RNAseq (rRNA depleted) reads.☆11Dec 4, 2017Updated 8 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 4 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 6 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆31Jul 21, 2026Updated 3 months ago
- ☆15May 22, 2025Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆23Oct 20, 2026Updated last week
- ☆17Feb 5, 2025Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data☆19Feb 21, 2018Updated 8 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- ☆18Jun 13, 2024Updated 2 years ago
- MGKit: Metagenomics Framework☆14Oct 31, 2022Updated 4 years ago