Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
☆24Dec 12, 2020Updated 5 years ago
Alternatives and similar repositories for epyestim
Users that are interested in epyestim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Apr 21, 2022Updated 4 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆104Jul 20, 2026Updated last week
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated 9 months ago
- An easy to use Julia framework for agent based modeling.☆13Dec 22, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This repository offers a promising solution to identify fraudulent manuscripts, and it could be a valuable tool for supporting scientific…☆10Jul 14, 2026Updated 2 weeks ago
- epidemia package☆50Jun 24, 2022Updated 4 years ago
- Python package for pairwise ranking☆15Oct 17, 2024Updated last year
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- A fast, precise, pure Python implementation of Fisher's exact test☆12Mar 27, 2017Updated 9 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731☆12Oct 27, 2023Updated 2 years ago
- Python script which scrapes play-by-play data from Basketball-Reference.com☆16May 13, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".☆27Jan 6, 2023Updated 3 years ago
- Cloudflare Worker for uploading images to Amazon S3☆16Nov 2, 2021Updated 4 years ago
- MISO: Learning Multiple Initial Solutions to Optimization Problems☆18Jun 18, 2026Updated last month
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 3 months ago
- General purpose population genetics software☆18Jul 15, 2019Updated 7 years ago
- ORBIS v2☆14May 18, 2014Updated 12 years ago
- Code and data for "Stochastic Optimal Control of Epidemic Processes in Networks", ML4H at NeurIPS 2018☆12Feb 10, 2023Updated 3 years ago
- NetworkX clone in JavaScript☆13Oct 17, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Probabilistic Record Linkage Using Pretrained Text Embeddings☆21Updated this week
- 基于wxauto的DeepSeek微信机器人☆19Feb 14, 2025Updated last year
- Optimal Control with PDEs solved by a Differentiable Solver☆15Aug 21, 2024Updated last year
- [KDD 2024] Papers about deep learning in epidemic modeling.☆71Oct 3, 2024Updated last year
- Python画图超级模块:pyecharts 功能大全☆11Oct 12, 2019Updated 6 years ago
- A simple Python library for compartment models☆11Aug 23, 2021Updated 4 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 10 months ago
- "Computational modeling and visualization" resource repository☆33Mar 11, 2023Updated 3 years ago
- 遠隔療養者モニタリングシステムのダッシュボードです。☆13Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inference framework for serological data☆20Jul 16, 2026Updated last week
- Real time estimation of epidemic Effective Reproduction Number for Luxembourg☆12Oct 24, 2022Updated 3 years ago
- A LaTeX package to run source code and command-line executable☆14Jun 13, 2026Updated last month
- Python script to facilitate easy automatic pulling of new papers from Arxiv, Biorxiv, and Medrxiv with custom search features.☆24Mar 27, 2021Updated 5 years ago
- Urban Generative Intelligence (UGI): A Foundational Platform for Embodied Agent and Future City☆12Dec 17, 2023Updated 2 years ago
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- 记录自己kaggle比赛☆12Jul 17, 2018Updated 8 years ago