Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
☆24Dec 12, 2020Updated 5 years ago
Alternatives and similar repositories for epyestim
Users that are interested in epyestim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Apr 21, 2022Updated 4 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆104Aug 25, 2026Updated last week
- pycon 2023 Tutorial☆13Apr 16, 2023Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated 11 months ago
- An easy to use Julia framework for agent based modeling.☆13Dec 22, 2023Updated 2 years ago
- This repository offers a promising solution to identify fraudulent manuscripts, and it could be a valuable tool for supporting scientific…☆10Jul 14, 2026Updated last month
- epidemia package☆50Jun 24, 2022Updated 4 years ago
- Python package for pairwise ranking☆15Oct 17, 2024Updated last year
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆21Jul 8, 2026Updated last month
- Updates to the synthetic contact matrices☆41Sep 27, 2023Updated 2 years ago
- ☆23May 21, 2023Updated 3 years ago
- Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731☆12Oct 27, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last month
- ☆54Jun 6, 2022Updated 4 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".☆27Jan 6, 2023Updated 3 years ago
- A "run-on-slack" translator app powered by DeepL APIs☆10Dec 9, 2022Updated 3 years ago
- Cloudflare Worker for uploading images to Amazon S3☆16Nov 2, 2021Updated 4 years ago
- MISO: Learning Multiple Initial Solutions to Optimization Problems☆18Jun 18, 2026Updated 2 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 4 months ago
- General purpose population genetics software☆18Jul 15, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Automatic differentiation for FEniCS/Dolfin☆19Mar 9, 2026Updated 5 months ago
- Code and data for "Stochastic Optimal Control of Epidemic Processes in Networks", ML4H at NeurIPS 2018☆12Feb 10, 2023Updated 3 years ago
- 基于wxauto的DeepSeek微信机器人☆19Feb 14, 2025Updated last year
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆22Updated this week
- [KDD 2024] Papers about deep learning in epidemic modeling.☆72Oct 3, 2024Updated last year
- Python画图超级模块:pyecharts 功能大全☆11Oct 12, 2019Updated 6 years ago
- A simple Python library for compartment models☆11Aug 23, 2021Updated 5 years ago
- Show / hide cursorline automatically☆18Aug 25, 2023Updated 3 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Real time estimation of epidemic Effective Reproduction Number for Luxembourg☆12Oct 24, 2022Updated 3 years ago
- A LaTeX package to run source code and command-line executable☆14Aug 12, 2026Updated 3 weeks ago
- Python script to facilitate easy automatic pulling of new papers from Arxiv, Biorxiv, and Medrxiv with custom search features.☆24Mar 27, 2021Updated 5 years ago
- Library for using USB Host with ESP32☆14Sep 8, 2024Updated last year
- Urban Generative Intelligence (UGI): A Foundational Platform for Embodied Agent and Future City☆12Dec 17, 2023Updated 2 years ago
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- いい感じにMarkdownを書くためのプラグイン☆13Aug 21, 2015Updated 11 years ago