Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
☆24Dec 12, 2020Updated 5 years ago
Alternatives and similar repositories for epyestim
Users that are interested in epyestim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to estimate time varying instantaneous reproduction number during epidemics☆104Updated this week
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Apr 21, 2022Updated 4 years ago
- pycon 2023 Tutorial☆13Apr 16, 2023Updated 3 years ago
- ☆11Dec 2, 2024Updated last year
- daily SARS-CoV2 Re Values for select countries. See https://ibz-shiny.ethz.ch/covid-19-re/ for interactive visualisations.☆12Mar 23, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- This repository contains an attempt at using Graph Attention based Reinforcement Learning for graphical state space. The code also provid…☆10Jun 27, 2021Updated 4 years ago
- A fast, precise, pure Python implementation of Fisher's exact test☆12Mar 27, 2017Updated 9 years ago
- A Neural Network Approach for Real-Time High-Dimensional Optimal Control☆30Sep 9, 2022Updated 3 years ago
- MISO: Learning Multiple Initial Solutions to Optimization Problems☆16Nov 8, 2024Updated last year
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- ☆23May 21, 2023Updated 3 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731☆12Oct 27, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated last year
- Landscape dynamic network biomarkers☆14Sep 21, 2017Updated 8 years ago
- Cloudflare Worker for uploading images to Amazon S3☆16Nov 2, 2021Updated 4 years ago
- Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".☆27Jan 6, 2023Updated 3 years ago
- RSV Scenario Modeling Hub☆16May 18, 2026Updated last week
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated last month
- Code and data for "Stochastic Optimal Control of Epidemic Processes in Networks", ML4H at NeurIPS 2018☆12Feb 10, 2023Updated 3 years ago
- 👓 Example REST API with graph database Neo4j☆10Jan 3, 2017Updated 9 years ago
- NetworkX clone in JavaScript☆13Oct 17, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- epydemix, the ABC of epidemics☆64May 15, 2026Updated 2 weeks ago
- A simple Python library for compartment models☆11Aug 23, 2021Updated 4 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 8 months ago
- Inference framework for serological data☆20Mar 31, 2026Updated last month
- いい感じにMarkdownを書くためのプラグイン☆13Aug 21, 2015Updated 10 years ago
- Use EPG (XMLTV) files in your project☆14Feb 8, 2020Updated 6 years ago
- ☆59May 22, 2026Updated last week
- Urban Generative Intelligence (UGI): A Foundational Platform for Embodied Agent and Future City☆12Dec 17, 2023Updated 2 years ago
- A CSL file for zotero users in IOPEN☆10May 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A LaTeX package to run source code and command-line executable☆14May 20, 2026Updated last week
- Real time estimation of epidemic Effective Reproduction Number for Luxembourg☆12Oct 24, 2022Updated 3 years ago
- "Computational modeling and visualization" resource repository☆33Mar 11, 2023Updated 3 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 8 months ago
- ☆11Apr 2, 2021Updated 5 years ago
- Calculation of the Ripley K (spatial statistics) value in python☆13Sep 29, 2025Updated 8 months ago
- Python画图超级模块:pyecharts 功能大全☆11Oct 12, 2019Updated 6 years ago