lo-hfk / epyestimLinks
Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers
☆22Updated 4 years ago
Alternatives and similar repositories for epyestim
Users that are interested in epyestim are comparing it to the libraries listed below
Sorting:
- Create synthetic populations for COVID-19 epidemic analyses.☆48Updated 7 months ago
- COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions☆273Updated 2 months ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆122Updated 2 years ago
- epydemix, the ABC of epidemics☆42Updated 3 weeks ago
- CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.☆112Updated last week
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".☆27Updated 2 years ago
- Covid19 microsimulation☆15Updated 5 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆14Updated 3 years ago
- ☆83Updated 4 years ago
- Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochasti…☆33Updated 2 years ago
- Updates to the synthetic contact matrices☆37Updated last year
- ☆12Updated 3 years ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆41Updated 5 years ago
- Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distanc…☆672Updated 2 years ago
- Simulators for Compartmental Models in Epidemiology☆40Updated 5 years ago
- Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China☆22Updated 2 years ago
- Simple SEIR model Python script for the COVID-19 pandemic with real world data comparison.☆82Updated 4 years ago
- ☆22Updated 2 years ago
- small template code to create a multilayer network using matplotlib and networkx☆116Updated 3 years ago
- Simulate an epidemic metapopulation model with mobility-reducing containment strategies☆11Updated 5 years ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 5 years ago
- Supplemental information and data for the manuscript 'Sparking "The BBC Four Pandemic": Leveraging citizen science and mobile phones to m…☆10Updated 5 years ago
- ☆11Updated 5 years ago
- The original library for analyzing multilayer networks.☆148Updated last year
- ☆44Updated 2 years ago
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆162Updated last month
- European Covid-19 Forecast Hub.☆48Updated 10 months ago
- Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.☆25Updated 2 weeks ago
- France compared to Italy☆10Updated 3 years ago