ARTIC nanopore protocol for nCoV2019 novel coronavirus
☆171Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for artic-ncov2019
Users that are interested in artic-ncov2019 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The ARTIC fieldbioinformatics pipeline☆133Updated this week
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆86Mar 2, 2026Updated 3 months ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Jun 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Apr 12, 2023Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 4 years ago
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 3 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated last month
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Repo for PrimerSchemes☆17Jun 10, 2026Updated last week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated 3 weeks ago
- ☆75Jan 23, 2024Updated 2 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 3 weeks ago
- ☆27Aug 2, 2023Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 8 months ago
- ☆44Feb 13, 2026Updated 4 months ago
- Depth-weighted De-Mixing☆133Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆43Nov 20, 2019Updated 6 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆135Jun 10, 2026Updated last week
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Updated this week
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated 2 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 4 months ago
- SURPI☆86May 10, 2016Updated 10 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- snipit: summarise snps relative to your reference sequence☆173Jan 13, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆165Jun 12, 2026Updated last week
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 9 months ago
- ☆38Jan 12, 2026Updated 5 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 2 months ago