artic-network / artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
☆170Updated 2 years ago
Alternatives and similar repositories for artic-ncov2019
Users that are interested in artic-ncov2019 are comparing it to the libraries listed below
Sorting:
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- The ARTIC field bioinformatics pipeline☆122Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆120Updated this week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆223Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆201Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- ☆207Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- Scan contig files against PubMLST typing schemes☆224Updated 2 years ago
- Genome Assembly and Annotation Service code☆211Updated last year
- quality filtering tool for long reads☆329Updated last year
- Fast and accurately polish the genome generated by long reads.☆223Updated 4 months ago
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆145Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆362Updated 3 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆265Updated 4 months ago
- A tool to circularize genome assemblies☆242Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- ☆186Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆252Updated this week
- An updated pipeline for pangenome investigation☆298Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆277Updated 6 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago