kpzoo / EpiFilterLinks
Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional approaches
☆22Updated 2 years ago
Alternatives and similar repositories for EpiFilter
Users that are interested in EpiFilter are comparing it to the libraries listed below
Sorting:
- ☆10Updated 2 months ago
- An R package for Bayes Linear emulation and history matching.☆17Updated last week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated 2 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Some code for monkeypox☆10Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆14Updated 3 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆19Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆16Updated last year
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated last month
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Updates to the synthetic contact matrices☆39Updated 2 years ago
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆11Updated 2 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆22Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 2 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Updated 3 months ago
- ☆42Updated 3 months ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated 2 weeks ago
- Create Contact Matrices from Population Data☆20Updated last week
- ☆17Updated 4 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Updated 3 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆20Updated 3 months ago