Scrapping tool for GISAID data regarding SARS-CoV-2
☆42May 22, 2023Updated 3 years ago
Alternatives and similar repositories for gisaid-scrapper
Users that are interested in gisaid-scrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- ☆10May 28, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆29Aug 3, 2026Updated last week
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated 2 months ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- Inference framework for serological data☆20Jul 16, 2026Updated 3 weeks ago
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆11Nov 14, 2024Updated last year
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 6 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 5 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Mar 19, 2019Updated 7 years ago
- A call for contributions to the report of the FAIR Data Expert Group☆16Aug 30, 2017Updated 8 years ago
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆19Jan 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Reference-based consensus creation☆61Updated this week
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Jul 17, 2026Updated 3 weeks ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32May 24, 2026Updated 2 months ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated last month
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆128Aug 4, 2026Updated last week
- Burrows-Wheeler Transform and FM-index in golang☆21Apr 7, 2023Updated 3 years ago
- Metro navigation and accessibility☆12Feb 7, 2018Updated 8 years ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated 2 weeks ago
- Docker image build for nextstrain/base☆12Aug 5, 2026Updated last week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆63Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Oct 3, 2023Updated 2 years ago
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- ☆14Jul 23, 2026Updated 3 weeks ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- ☆16Jan 24, 2023Updated 3 years ago