Scrapping tool for GISAID data regarding SARS-CoV-2
☆42May 22, 2023Updated 3 years ago
Alternatives and similar repositories for gisaid-scrapper
Users that are interested in gisaid-scrapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- ☆10May 28, 2023Updated 3 years ago
- Nextstrain build for avian influenza viruses☆29Aug 3, 2026Updated 3 weeks ago
- Registration of Galaxy Tools in Elixir☆12Jan 7, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated database of completed assemblies with taxonomy IDs☆53Updated this week
- Inference framework for serological data☆20Jul 16, 2026Updated last month
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆11Nov 14, 2024Updated last year
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 6 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 6 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Mar 19, 2019Updated 7 years ago
- A call for contributions to the report of the FAIR Data Expert Group☆16Aug 30, 2017Updated 9 years ago
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆19Jan 21, 2024Updated 2 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference-based consensus creation☆61Updated this week
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Metro navigation and accessibility☆12Feb 7, 2018Updated 8 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Jul 17, 2026Updated last month
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32May 24, 2026Updated 3 months ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 2 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- ☆13Jul 20, 2026Updated last month
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 4 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆128Updated this week
- Burrows-Wheeler Transform and FM-index in golang☆21Apr 7, 2023Updated 3 years ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- Docker image build for nextstrain/base☆12Updated this week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Implementation an RNN time-embedding layer from "Time-Dependent Representation for Neural Event Sequence Prediction" paper☆17Jan 4, 2020Updated 6 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆63Updated this week
- ☆12Oct 3, 2023Updated 2 years ago
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- R package for large-scale CNV analysis from RNA-seq☆20Dec 21, 2023Updated 2 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- ☆14Jul 23, 2026Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago