SeqMonk NGS visualisation and analysis tool
☆51Mar 31, 2026Updated 3 months ago
Alternatives and similar repositories for SeqMonk
Users that are interested in SeqMonk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing and analysis of data coming from Illumina sequencing machines☆11Jul 22, 2026Updated last week
- A web based tool to manage and automate the processing of publicly available datasets.☆40Mar 16, 2021Updated 5 years ago
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 7 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆455Updated this week
- An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts☆18Aug 14, 2025Updated 11 months ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 5 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 8 months ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Updated this week
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆97Dec 24, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Jun 25, 2019Updated 7 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 5 months ago
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆16Nov 18, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- CDS prediction in transcripts☆23Mar 5, 2025Updated last year
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Apr 2, 2016Updated 10 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆17Jul 23, 2019Updated 7 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,480Updated this week
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 7 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 11 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 9 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 weeks ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- Cutadapt removes adapter sequences from sequencing reads☆586Updated this week