s-andrews / SeqMonkLinks
SeqMonk NGS visualisation and analysis tool
☆50Updated 2 months ago
Alternatives and similar repositories for SeqMonk
Users that are interested in SeqMonk are comparing it to the libraries listed below
Sorting:
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- BigWig and BAM utilities☆100Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- ☆78Updated 11 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 4 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆61Updated 5 years ago
- Tools for analyzing DNA methylation data☆44Updated last week
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- FusionInspector code☆58Updated 4 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- ☆72Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Precision HLA typing from next-generation sequencing data☆76Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago