phflot / flow_registrationLinks
Flow-Registration toolbox for 2P motion compensation
☆24Updated 11 months ago
Alternatives and similar repositories for flow_registration
Users that are interested in flow_registration are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- motion correction☆17Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated this week
- ☆34Updated 2 months ago
- Tools for distributed alignment of massive images☆85Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 3 years ago
- ☆17Updated 2 years ago
- ☆8Updated 3 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆83Updated 3 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆150Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆98Updated 3 weeks ago
- BIRDS plug-in on Fiji and attached jar package☆20Updated 3 years ago
- Brainways☆18Updated last month
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆91Updated 8 months ago
- ☆39Updated 3 years ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆15Updated last week