Alternatives and similar repositories for flow_registration:

Users that are interested in flow_registration are comparing it to the libraries listed below

• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆12Updated this week
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated last week
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆52Updated 8 months ago
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆73Updated 6 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• ankilab / DeepD3
  ☆21Updated 5 months ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 2 years ago
• nel-lab / FIOLA
  ☆32Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 weeks ago
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• bleach1by1 / BIRDS_plugin
  BIRDS plug-in on Fiji and attached jar package
  ☆18Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆14Updated this week
• embl-cba / elastixWrapper
  ☆13Updated 2 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆78Updated this week
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆12Updated last week
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆39Updated last month
• NTCColumbia / moco
  motion correction
  ☆16Updated last year
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆12Updated this week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆44Updated this week
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆24Updated last year
• vsnnlab / AMaSiNe
  ☆14Updated 2 years ago
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆26Updated 5 years ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆37Updated last month
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆23Updated 3 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆20Updated 2 years ago