Alternatives and similar repositories for BakingTray

Users that are interested in BakingTray are comparing it to the libraries listed below

• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆55Updated 2 years ago
• bkntr / brainways
  Brainways
  ☆22Updated 4 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated last week
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆34Updated 5 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆12Updated 5 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆49Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆19Updated last week
• cwindolf / dartsort
  ☆27Updated last week
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆24Updated 3 years ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆16Updated 3 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• Whitlock-Group / HERBS
  ☆52Updated last year
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated 2 years ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last week
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated 3 weeks ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated 3 weeks ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated 2 years ago
• caichangjia / VolPy
  Voltage imaging analysis in python
  ☆10Updated 4 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆13Updated 2 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆30Updated 2 years ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆17Updated 9 months ago
• MouseLand / neuropop
  analysis tools for large-scale neural recordings
  ☆16Updated 9 months ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago