Alternatives and similar repositories for BakingTray:

Users that are interested in BakingTray are comparing it to the libraries listed below

• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆16Updated last year
• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆11Updated 4 years ago
• bkntr / brainways
  Brainways
  ☆16Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆48Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 5 years ago
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated last year
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆41Updated this week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 7 years ago
• neuroinformatics-unit / swc-hpc-pose-estimation
  Pose estimation scripts to be run on the SWC HPC cluster
  ☆12Updated last year
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated this week
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆14Updated last year
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆11Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆13Updated last week
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆86Updated 4 months ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆22Updated 7 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• nel-lab / FIOLA
  ☆34Updated last year
• danionella / lsmaq
  Laser scanning microscope acquisition software
  ☆16Updated 3 weeks ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 10 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated last week
• acquire-project / acquire-python
  Acquire: a multi-camera video streaming software focusing on microscopy
  ☆20Updated 4 months ago