SWC-Advanced-Microscopy / BakingTrayLinks
Serial-section automated anatomy extension for ScanImage
☆14Updated last week
Alternatives and similar repositories for BakingTray
Users that are interested in BakingTray are comparing it to the libraries listed below
Sorting:
- motion correction☆17Updated 2 years ago
- Brainways☆18Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- ☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- pipeline for volumetric cell segmentation☆12Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆18Updated 2 weeks ago
- Control and design of two-photon photostimulation experiments☆16Updated last year
- ☆34Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Single photon tools for Neuroscience☆35Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆16Updated this week
- ☆38Updated 3 years ago
- ☆8Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 3 weeks ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 7 months ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year