SWC-Advanced-Microscopy / BakingTray
Serial-section automated anatomy extension for ScanImage
☆12Updated last month
Alternatives and similar repositories for BakingTray:
Users that are interested in BakingTray are comparing it to the libraries listed below
- motion correction☆17Updated 2 years ago
- Brainways☆16Updated last week
- ☆17Updated last year
- Fast, volumetric cell detection. In development.☆17Updated last week
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Control and design of two-photon photostimulation experiments☆16Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- pipeline for volumetric cell segmentation☆12Updated last month
- Build unbiased anatomical templates from individual images☆11Updated 3 weeks ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 6 months ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆14Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- ☆36Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- ☆10Updated 2 years ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- ☆18Updated 3 years ago
- Laser scanning microscope acquisition software☆16Updated 2 months ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated last week
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year