SWC-Advanced-Microscopy / BakingTrayLinks
Serial-section automated anatomy extension for ScanImage
☆16Updated last month
Alternatives and similar repositories for BakingTray
Users that are interested in BakingTray are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- motion correction☆17Updated 2 years ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Brainways☆21Updated last month
- ☆40Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆52Updated last year
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆97Updated 10 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Single photon tools for Neuroscience☆36Updated last year
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆17Updated last week
- Histology processing☆70Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- ☆17Updated 2 years ago
- Fast, volumetric cell detection. In development.☆19Updated 4 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 6 months ago
- Calcium imaging inter-session alignment☆13Updated this week
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- pipeline for volumetric cell segmentation☆13Updated 2 weeks ago
- Collection of probe description for probeinterface☆16Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆78Updated 9 months ago
- analysis tools for large-scale neural recordings☆15Updated 6 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last week