Nextflow workflow template repository
☆20Mar 12, 2026Updated last month
Alternatives and similar repositories for wf-template
Users that are interested in wf-template are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- ☆21Jan 23, 2026Updated 2 months ago
- ☆32Mar 9, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆61Apr 10, 2026Updated last week
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated last year
- ☆41Dec 15, 2025Updated 4 months ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated last year
- ☆27Aug 2, 2023Updated 2 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- viral-ngs: complete pipelines☆73Apr 9, 2026Updated last week
- Assembly of Nanopore Sequencing☆17Updated this week
- ☆14Sep 11, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 6 months ago
- ☆26May 16, 2025Updated 11 months ago
- ☆29May 2, 2024Updated last year
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 6 months ago
- Evaluating Nanopore-based bacterial variant calling☆22Jul 23, 2025Updated 8 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆32Apr 1, 2026Updated 2 weeks ago
- A repository for collecting GPU basecalling stats☆89Feb 10, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆69Updated this week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated last month
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated 3 weeks ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated 10 months ago
- Intra-species bacterial contamination detection☆25Updated this week
- Terraform code samples for use with AWS ECS☆10Oct 13, 2017Updated 8 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 4 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆160Apr 9, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆44Jan 23, 2026Updated 2 months ago
- ☆44Mar 13, 2026Updated last month
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Feb 5, 2026Updated 2 months ago
- ☆11Dec 22, 2025Updated 3 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- ☆12Aug 20, 2024Updated last year
- k-mer probability logo☆11Jan 20, 2023Updated 3 years ago