Nextflow workflow template repository
☆20Jul 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for wf-template
Users that are interested in wf-template are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- Set of tools for viral metagenomics.☆17Updated this week
- ☆34Mar 9, 2026Updated 5 months ago
- ☆22Jun 1, 2026Updated 2 months ago
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 6 months ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- ☆42Dec 15, 2025Updated 8 months ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated 2 years ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated 2 years ago
- viral-ngs: complete pipelines☆76Aug 7, 2026Updated last week
- ☆27Aug 2, 2023Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆54Mar 23, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆65Updated this week
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆14Updated this week
- ☆30May 2, 2024Updated 2 years ago
- ☆28May 16, 2025Updated last year
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 5 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated 10 months ago
- Evaluating Nanopore-based bacterial variant calling☆23Jul 23, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Dec 22, 2025Updated 7 months ago
- ☆10Jul 10, 2024Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Bacterial surveillance pipeline.☆28Aug 10, 2026Updated last week
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- Terraform code samples for use with AWS ECS☆10Oct 13, 2017Updated 8 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- ☆44Mar 13, 2026Updated 5 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆27Jul 13, 2023Updated 3 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated last year
- k-mer probability logo☆12Jan 20, 2023Updated 3 years ago
- ☆12Aug 20, 2024Updated last year
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆261Updated this week