epi2me-labs / wf-templateLinks
Nextflow workflow template repository
☆17Updated last week
Alternatives and similar repositories for wf-template
Users that are interested in wf-template are comparing it to the libraries listed below
Sorting:
- ☆31Updated 2 weeks ago
- ☆46Updated this week
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated 2 weeks ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- ☆31Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 8 months ago
- ☆49Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- High-quality Nanopore-only genome polisher☆69Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- python plotly Circos from VCF☆39Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- k-mer learning materials☆80Updated 7 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Visualise and analyse nanopore (ONT) raw signals☆121Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last week
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- ☆66Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago