Use machine learning to design codon-optimized DNA sequences for increased protein expression.
☆17Sep 27, 2022Updated 3 years ago
Alternatives and similar repositories for Codon-optimization
Users that are interested in Codon-optimization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆71Apr 10, 2023Updated 3 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- TISIGNER: Unleash the power of synthetic biology☆30May 24, 2025Updated last year
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆23Mar 29, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- ☆11May 12, 2026Updated 2 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- Methods to predict antibody immunogenicity☆16Aug 21, 2025Updated 11 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆55Nov 14, 2023Updated 2 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆15Sep 8, 2023Updated 2 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scoring methods for predicting the DDG upon protein mutation☆17Feb 20, 2023Updated 3 years ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 7 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆19Feb 15, 2026Updated 5 months ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 11 months ago
- HLA-I ligand predictor☆47Mar 19, 2026Updated 4 months ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Jul 30, 2026Updated last week
- Solvent Accessible Surface calculation software for biomolecules.☆20Apr 23, 2023Updated 3 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 3 years ago
- ☆16Sep 9, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆77Sep 2, 2020Updated 5 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆32Oct 6, 2022Updated 3 years ago
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Apr 16, 2026Updated 3 months ago
- ☆20Jan 9, 2023Updated 3 years ago
- ☆13Oct 4, 2022Updated 3 years ago
- GitHub for AI4PD 2023 Workshop in Chile☆12Oct 12, 2023Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆28Nov 27, 2025Updated 8 months ago
- fulltext-article-downloader is a Python package for programmatically downloading the full text of research articles from their DOIs. It c…☆19May 12, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DIABLO - an integrative multi-group, multi-dataset classification method☆29Feb 26, 2019Updated 7 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆20Mar 1, 2024Updated 2 years ago
- ☆10Feb 18, 2020Updated 6 years ago
- Scripts for calculating RESP charges with Gaussian, starting only with .xyz file of your compound. Generate .mol2, .frcmod and .pdb with …☆10Mar 26, 2019Updated 7 years ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆21Updated this week
- ☆55Apr 1, 2025Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆257May 13, 2025Updated last year