Use machine learning to design codon-optimized DNA sequences for increased protein expression.
☆16Sep 27, 2022Updated 3 years ago
Alternatives and similar repositories for Codon-optimization
Users that are interested in Codon-optimization are comparing it to the libraries listed below
Sorting:
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆71Apr 10, 2023Updated 2 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Mar 13, 2024Updated 2 years ago
- TISIGNER: Unleash the power of synthetic biology☆29May 24, 2025Updated 9 months ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- ☆11Oct 23, 2025Updated 4 months ago
- ☆11Jan 2, 2021Updated 5 years ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Sep 8, 2023Updated 2 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 5 years ago
- Computationally Restoring the Potency of a Clinical Antibody☆19Mar 1, 2024Updated 2 years ago
- ☆26Apr 22, 2024Updated last year
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆19Feb 15, 2026Updated last month
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 5 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Oct 6, 2022Updated 3 years ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆21Jun 30, 2023Updated 2 years ago
- HLA-I ligand predictor☆44Sep 24, 2025Updated 5 months ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 7 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 6 months ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Nov 20, 2025Updated 4 months ago
- Solvent Accessible Surface calculation software for biomolecules.☆18Apr 23, 2023Updated 2 years ago
- ☆18Jan 9, 2023Updated 3 years ago
- ☆15Sep 9, 2024Updated last year
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Mar 2, 2026Updated 2 weeks ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 3 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated last year
- DIABLO - an integrative multi-group, multi-dataset classification method☆27Feb 26, 2019Updated 7 years ago
- Rosetta Funclib☆25May 9, 2020Updated 5 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Machine learning models for antibody sequences in PyTorch☆41May 25, 2021Updated 4 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated last year
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 5 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- A LLM-based Agent Framework for Drug Discovery☆21Jan 11, 2026Updated 2 months ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆77Apr 1, 2023Updated 2 years ago
- ☆10Apr 30, 2025Updated 10 months ago