drgoulet / Codon-optimization
Use machine learning to design codon-optimized DNA sequences for increased protein expression.
☆15Updated 2 years ago
Alternatives and similar repositories for Codon-optimization
Users that are interested in Codon-optimization are comparing it to the libraries listed below
Sorting:
- PRedictor of IMmunogenic Epitopes☆20Updated last year
- Python package and command line tool for epitope prediction☆51Updated 9 months ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- Peptide library design☆23Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Code for LazyAF pipeline☆20Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Multi-Species Codon Optimization Engine☆27Updated last year
- ☆22Updated last year
- Model-based Analysis of Protein Degradability☆10Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- A platform to do RNA science☆27Updated 4 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions☆13Updated 8 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Fast protein domain structure embedding+search tool☆20Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolu…☆13Updated 2 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Updated 5 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year